Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25315 and PFLU_RS25320 are separated by 16 nucleotides PFLU_RS25320 and PFLU_RS25325 overlap by 116 nucleotides PFLU_RS25325 and PFLU_RS25330 are separated by 79 nucleotides PFLU_RS25330 and PFLU_RS25335 are separated by 295 nucleotides
PFLU_RS25315: PFLU_RS25315 - dihydroneopterin triphosphate 2'-epimerase, at 5,656,651 to 5,657,028
_RS25315
PFLU_RS25320: PFLU_RS25320 - DUF1244 domain-containing protein, at 5,657,045 to 5,657,341
_RS25320
PFLU_RS25325: PFLU_RS25325 - HopJ type III effector protein, at 5,657,226 to 5,657,675
_RS25325
PFLU_RS25330: PFLU_RS25330 - thioredoxin-disulfide reductase, at 5,657,755 to 5,658,717
_RS25330
PFLU_RS25335: PFLU_RS25335 - sulfate transporter CysZ, at 5,659,013 to 5,659,780
_RS25335
Position (kb) 5657
5658
5659 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.828 kb on + strand, within PFLU_RS25315 at 5656.828 kb on + strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.842 kb on + strand, within PFLU_RS25315 at 5656.842 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.943 kb on - strand, within PFLU_RS25315 at 5656.943 kb on - strand, within PFLU_RS25315 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.246 kb on + strand at 5657.246 kb on + strand at 5657.246 kb on + strand at 5657.279 kb on + strand at 5657.393 kb on + strand, within PFLU_RS25325 at 5657.418 kb on + strand, within PFLU_RS25325 at 5657.418 kb on + strand, within PFLU_RS25325 at 5657.419 kb on - strand, within PFLU_RS25325 at 5657.419 kb on - strand, within PFLU_RS25325 at 5657.424 kb on + strand, within PFLU_RS25325 at 5657.424 kb on + strand, within PFLU_RS25325 at 5657.442 kb on - strand, within PFLU_RS25325 at 5657.456 kb on - strand, within PFLU_RS25325 at 5657.560 kb on - strand, within PFLU_RS25325 at 5657.560 kb on - strand, within PFLU_RS25325 at 5657.604 kb on - strand, within PFLU_RS25325 at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.680 kb on + strand at 5657.681 kb on - strand at 5657.681 kb on - strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.756 kb on + strand at 5657.756 kb on + strand at 5657.756 kb on + strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5658.744 kb on + strand at 5658.744 kb on + strand at 5658.745 kb on - strand at 5658.745 kb on - strand at 5658.745 kb on - strand at 5658.745 kb on - strand at 5658.857 kb on - strand at 5658.863 kb on + strand at 5658.863 kb on + strand at 5658.863 kb on + strand at 5658.878 kb on + strand at 5658.890 kb on - strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.926 kb on + strand at 5658.927 kb on - strand at 5658.927 kb on - strand at 5658.927 kb on - strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.933 kb on + strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.934 kb on - strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.937 kb on + strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5658.938 kb on - strand at 5659.043 kb on + strand at 5659.044 kb on - strand at 5659.044 kb on - strand at 5659.044 kb on - strand at 5659.142 kb on + strand, within PFLU_RS25335 at 5659.142 kb on + strand, within PFLU_RS25335 at 5659.143 kb on - strand, within PFLU_RS25335 at 5659.143 kb on - strand, within PFLU_RS25335 at 5659.143 kb on - strand, within PFLU_RS25335 at 5659.220 kb on + strand, within PFLU_RS25335 at 5659.221 kb on - strand, within PFLU_RS25335 at 5659.221 kb on - strand, within PFLU_RS25335 at 5659.221 kb on - strand, within PFLU_RS25335 at 5659.227 kb on + strand, within PFLU_RS25335 at 5659.228 kb on - strand, within PFLU_RS25335 at 5659.228 kb on - strand, within PFLU_RS25335 at 5659.228 kb on - strand, within PFLU_RS25335 at 5659.252 kb on - strand, within PFLU_RS25335 at 5659.291 kb on + strand, within PFLU_RS25335 at 5659.291 kb on + strand, within PFLU_RS25335 at 5659.291 kb on + strand, within PFLU_RS25335 at 5659.291 kb on + strand, within PFLU_RS25335 at 5659.291 kb on + strand, within PFLU_RS25335 at 5659.292 kb on - strand, within PFLU_RS25335 at 5659.295 kb on - strand, within PFLU_RS25335 at 5659.295 kb on - strand, within PFLU_RS25335 at 5659.436 kb on + strand, within PFLU_RS25335 at 5659.437 kb on - strand, within PFLU_RS25335 at 5659.465 kb on + strand, within PFLU_RS25335 at 5659.466 kb on - strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.547 kb on + strand, within PFLU_RS25335 at 5659.548 kb on - strand, within PFLU_RS25335 at 5659.548 kb on - strand, within PFLU_RS25335 at 5659.548 kb on - strand, within PFLU_RS25335 at 5659.649 kb on + strand, within PFLU_RS25335 at 5659.649 kb on + strand, within PFLU_RS25335 at 5659.650 kb on - strand, within PFLU_RS25335
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,656,777 + PFLU_RS25315 0.33 +0.9 5,656,777 + PFLU_RS25315 0.33 +0.4 5,656,777 + PFLU_RS25315 0.33 +1.3 5,656,777 + PFLU_RS25315 0.33 +0.7 5,656,777 + PFLU_RS25315 0.33 +0.6 5,656,778 - PFLU_RS25315 0.34 +0.9 5,656,778 - PFLU_RS25315 0.34 +0.6 5,656,778 - PFLU_RS25315 0.34 -0.1 5,656,778 - PFLU_RS25315 0.34 +0.6 5,656,778 - PFLU_RS25315 0.34 +0.4 5,656,778 - PFLU_RS25315 0.34 -0.4 5,656,828 + PFLU_RS25315 0.47 +0.2 5,656,828 + PFLU_RS25315 0.47 +0.1 5,656,829 - PFLU_RS25315 0.47 +0.7 5,656,829 - PFLU_RS25315 0.47 -0.4 5,656,829 - PFLU_RS25315 0.47 -0.2 5,656,842 + PFLU_RS25315 0.51 -0.9 5,656,842 + PFLU_RS25315 0.51 +0.5 5,656,942 + PFLU_RS25315 0.77 +0.3 5,656,942 + PFLU_RS25315 0.77 +0.6 5,656,942 + PFLU_RS25315 0.77 +0.4 5,656,942 + PFLU_RS25315 0.77 -0.7 5,656,943 - PFLU_RS25315 0.77 -1.9 5,656,943 - PFLU_RS25315 0.77 +0.0 5,657,183 + PFLU_RS25320 0.46 -1.3 5,657,183 + PFLU_RS25320 0.46 +0.2 5,657,183 + PFLU_RS25320 0.46 -0.8 5,657,183 + PFLU_RS25320 0.46 -0.7 5,657,183 + PFLU_RS25320 0.46 +1.7 5,657,184 - PFLU_RS25320 0.47 +0.1 5,657,184 - PFLU_RS25320 0.47 +0.5 5,657,184 - PFLU_RS25320 0.47 +0.4 5,657,184 - PFLU_RS25320 0.47 +0.3 5,657,184 - PFLU_RS25320 0.47 +0.0 5,657,184 - PFLU_RS25320 0.47 +0.7 5,657,184 - PFLU_RS25320 0.47 +2.3 5,657,184 - PFLU_RS25320 0.47 -0.7 5,657,246 + -0.4 5,657,246 + -1.1 5,657,246 + -0.4 5,657,279 + +0.5 5,657,393 + PFLU_RS25325 0.37 +1.0 5,657,418 + PFLU_RS25325 0.43 +0.1 5,657,418 + PFLU_RS25325 0.43 +0.9 5,657,419 - PFLU_RS25325 0.43 +0.4 5,657,419 - PFLU_RS25325 0.43 +0.9 5,657,424 + PFLU_RS25325 0.44 +1.2 5,657,424 + PFLU_RS25325 0.44 -0.4 5,657,442 - PFLU_RS25325 0.48 +1.6 5,657,456 - PFLU_RS25325 0.51 -0.0 5,657,560 - PFLU_RS25325 0.74 +0.7 5,657,560 - PFLU_RS25325 0.74 -0.4 5,657,604 - PFLU_RS25325 0.84 +0.0 5,657,638 + +3.7 5,657,638 + +0.0 5,657,638 + -0.1 5,657,638 + -0.2 5,657,639 - -0.3 5,657,639 - +0.5 5,657,639 - -0.5 5,657,639 - +0.1 5,657,680 + +0.6 5,657,681 - -0.1 5,657,681 - -1.9 5,657,752 + -1.4 5,657,752 + -0.3 5,657,752 + -0.1 5,657,752 + -1.1 5,657,752 + -1.3 5,657,753 - +0.8 5,657,753 - +0.3 5,657,753 - +0.7 5,657,753 - +0.6 5,657,756 + +0.4 5,657,756 + +0.4 5,657,756 + +0.7 5,657,757 - -0.9 5,657,757 - +0.3 5,657,757 - +0.2 5,657,757 - +0.7 5,657,757 - -0.7 5,658,744 + +0.7 5,658,744 + -0.7 5,658,745 - -0.7 5,658,745 - +0.3 5,658,745 - -1.0 5,658,745 - +0.8 5,658,857 - +0.4 5,658,863 + -0.3 5,658,863 + -1.8 5,658,863 + +0.1 5,658,878 + +1.1 5,658,890 - -0.9 5,658,926 + +0.3 5,658,926 + -0.3 5,658,926 + -0.3 5,658,926 + +0.5 5,658,926 + +0.3 5,658,926 + -0.8 5,658,926 + -0.3 5,658,926 + -0.4 5,658,927 - +0.4 5,658,927 - -1.7 5,658,927 - +1.6 5,658,933 + +1.1 5,658,933 + +0.7 5,658,933 + -1.3 5,658,933 + +1.0 5,658,933 + +1.5 5,658,933 + +0.4 5,658,933 + +1.0 5,658,933 + +1.6 5,658,933 + +0.3 5,658,933 + -1.1 5,658,933 + +0.4 5,658,933 + +1.8 5,658,933 + -1.3 5,658,934 - +1.7 5,658,934 - +0.4 5,658,934 - +0.6 5,658,934 - +1.0 5,658,934 - -1.2 5,658,934 - -1.2 5,658,934 - -0.0 5,658,934 - -0.5 5,658,934 - +0.3 5,658,934 - +0.9 5,658,934 - +0.4 5,658,934 - +0.4 5,658,934 - +0.5 5,658,937 + -0.1 5,658,937 + +1.4 5,658,937 + +0.1 5,658,937 + +1.1 5,658,937 + -0.9 5,658,937 + +0.8 5,658,937 + -2.4 5,658,937 + +1.4 5,658,937 + -0.4 5,658,937 + -1.9 5,658,937 + +0.4 5,658,937 + +1.4 5,658,937 + +0.5 5,658,937 + -1.1 5,658,937 + -0.4 5,658,937 + -0.2 5,658,937 + -1.1 5,658,937 + +0.6 5,658,937 + +0.8 5,658,937 + -0.2 5,658,937 + -0.2 5,658,937 + -0.5 5,658,938 - +0.1 5,658,938 - +0.6 5,658,938 - +1.1 5,658,938 - -1.3 5,658,938 - +0.8 5,658,938 - +0.9 5,658,938 - +1.4 5,658,938 - +1.7 5,658,938 - -1.0 5,658,938 - -0.2 5,658,938 - +0.4 5,658,938 - -0.5 5,658,938 - +2.1 5,658,938 - +0.1 5,659,043 + +1.1 5,659,044 - +1.0 5,659,044 - +1.3 5,659,044 - -0.3 5,659,142 + PFLU_RS25335 0.17 -2.4 5,659,142 + PFLU_RS25335 0.17 +0.4 5,659,143 - PFLU_RS25335 0.17 +0.0 5,659,143 - PFLU_RS25335 0.17 +0.7 5,659,143 - PFLU_RS25335 0.17 +0.2 5,659,220 + PFLU_RS25335 0.27 +0.4 5,659,221 - PFLU_RS25335 0.27 +0.9 5,659,221 - PFLU_RS25335 0.27 +0.5 5,659,221 - PFLU_RS25335 0.27 -1.8 5,659,227 + PFLU_RS25335 0.28 +2.7 5,659,228 - PFLU_RS25335 0.28 +0.6 5,659,228 - PFLU_RS25335 0.28 +0.3 5,659,228 - PFLU_RS25335 0.28 +0.6 5,659,252 - PFLU_RS25335 0.31 +0.7 5,659,291 + PFLU_RS25335 0.36 -1.2 5,659,291 + PFLU_RS25335 0.36 -1.7 5,659,291 + PFLU_RS25335 0.36 -0.1 5,659,291 + PFLU_RS25335 0.36 -2.1 5,659,291 + PFLU_RS25335 0.36 -1.2 5,659,292 - PFLU_RS25335 0.36 +0.5 5,659,295 - PFLU_RS25335 0.37 -0.6 5,659,295 - PFLU_RS25335 0.37 -0.5 5,659,436 + PFLU_RS25335 0.55 -0.1 5,659,437 - PFLU_RS25335 0.55 -0.9 5,659,465 + PFLU_RS25335 0.59 +0.1 5,659,466 - PFLU_RS25335 0.59 -1.0 5,659,547 + PFLU_RS25335 0.70 -1.0 5,659,547 + PFLU_RS25335 0.70 +0.1 5,659,547 + PFLU_RS25335 0.70 +0.8 5,659,547 + PFLU_RS25335 0.70 +0.1 5,659,547 + PFLU_RS25335 0.70 +1.7 5,659,547 + PFLU_RS25335 0.70 +0.6 5,659,548 - PFLU_RS25335 0.70 -0.2 5,659,548 - PFLU_RS25335 0.70 -0.4 5,659,548 - PFLU_RS25335 0.70 +0.8 5,659,649 + PFLU_RS25335 0.83 -2.5 5,659,649 + PFLU_RS25335 0.83 -0.4 5,659,650 - PFLU_RS25335 0.83 +0.8
Or see this region's nucleotide sequence