Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25310 and PFLU_RS25315 are separated by 2 nucleotides PFLU_RS25315 and PFLU_RS25320 are separated by 16 nucleotides PFLU_RS25320 and PFLU_RS25325 overlap by 116 nucleotides PFLU_RS25325 and PFLU_RS25330 are separated by 79 nucleotides
PFLU_RS25310: PFLU_RS25310 - GTP cyclohydrolase I FolE, at 5,656,088 to 5,656,648
_RS25310
PFLU_RS25315: PFLU_RS25315 - dihydroneopterin triphosphate 2'-epimerase, at 5,656,651 to 5,657,028
_RS25315
PFLU_RS25320: PFLU_RS25320 - DUF1244 domain-containing protein, at 5,657,045 to 5,657,341
_RS25320
PFLU_RS25325: PFLU_RS25325 - HopJ type III effector protein, at 5,657,226 to 5,657,675
_RS25325
PFLU_RS25330: PFLU_RS25330 - thioredoxin-disulfide reductase, at 5,657,755 to 5,658,717
_RS25330
Position (kb) 5657
5658 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5656.256 kb on - strand, within PFLU_RS25310 at 5656.256 kb on - strand, within PFLU_RS25310 at 5656.256 kb on - strand, within PFLU_RS25310 at 5656.301 kb on + strand, within PFLU_RS25310 at 5656.301 kb on + strand, within PFLU_RS25310 at 5656.302 kb on - strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.355 kb on + strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.356 kb on - strand, within PFLU_RS25310 at 5656.357 kb on + strand, within PFLU_RS25310 at 5656.357 kb on + strand, within PFLU_RS25310 at 5656.357 kb on + strand, within PFLU_RS25310 at 5656.358 kb on - strand, within PFLU_RS25310 at 5656.358 kb on - strand, within PFLU_RS25310 at 5656.358 kb on - strand, within PFLU_RS25310 at 5656.374 kb on + strand, within PFLU_RS25310 at 5656.408 kb on + strand, within PFLU_RS25310 at 5656.408 kb on + strand, within PFLU_RS25310 at 5656.408 kb on + strand, within PFLU_RS25310 at 5656.409 kb on - strand, within PFLU_RS25310 at 5656.409 kb on - strand, within PFLU_RS25310 at 5656.409 kb on - strand, within PFLU_RS25310 at 5656.503 kb on + strand, within PFLU_RS25310 at 5656.504 kb on - strand, within PFLU_RS25310 at 5656.646 kb on + strand at 5656.646 kb on + strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.647 kb on - strand at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.777 kb on + strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.778 kb on - strand, within PFLU_RS25315 at 5656.828 kb on + strand, within PFLU_RS25315 at 5656.828 kb on + strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.829 kb on - strand, within PFLU_RS25315 at 5656.842 kb on + strand, within PFLU_RS25315 at 5656.842 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.942 kb on + strand, within PFLU_RS25315 at 5656.943 kb on - strand, within PFLU_RS25315 at 5656.943 kb on - strand, within PFLU_RS25315 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.183 kb on + strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.184 kb on - strand, within PFLU_RS25320 at 5657.246 kb on + strand at 5657.246 kb on + strand at 5657.246 kb on + strand at 5657.279 kb on + strand at 5657.393 kb on + strand, within PFLU_RS25325 at 5657.418 kb on + strand, within PFLU_RS25325 at 5657.418 kb on + strand, within PFLU_RS25325 at 5657.419 kb on - strand, within PFLU_RS25325 at 5657.419 kb on - strand, within PFLU_RS25325 at 5657.424 kb on + strand, within PFLU_RS25325 at 5657.424 kb on + strand, within PFLU_RS25325 at 5657.442 kb on - strand, within PFLU_RS25325 at 5657.456 kb on - strand, within PFLU_RS25325 at 5657.560 kb on - strand, within PFLU_RS25325 at 5657.560 kb on - strand, within PFLU_RS25325 at 5657.604 kb on - strand, within PFLU_RS25325 at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.638 kb on + strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.639 kb on - strand at 5657.680 kb on + strand at 5657.681 kb on - strand at 5657.681 kb on - strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.752 kb on + strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.753 kb on - strand at 5657.756 kb on + strand at 5657.756 kb on + strand at 5657.756 kb on + strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand at 5657.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,656,256 - PFLU_RS25310 0.30 +0.4 5,656,256 - PFLU_RS25310 0.30 -1.2 5,656,256 - PFLU_RS25310 0.30 +0.4 5,656,301 + PFLU_RS25310 0.38 -0.4 5,656,301 + PFLU_RS25310 0.38 -0.4 5,656,302 - PFLU_RS25310 0.38 +0.8 5,656,355 + PFLU_RS25310 0.48 -0.7 5,656,355 + PFLU_RS25310 0.48 +0.6 5,656,355 + PFLU_RS25310 0.48 +0.1 5,656,355 + PFLU_RS25310 0.48 +0.3 5,656,355 + PFLU_RS25310 0.48 -0.7 5,656,355 + PFLU_RS25310 0.48 +0.1 5,656,355 + PFLU_RS25310 0.48 -1.9 5,656,355 + PFLU_RS25310 0.48 -0.8 5,656,356 - PFLU_RS25310 0.48 +1.0 5,656,356 - PFLU_RS25310 0.48 -0.7 5,656,356 - PFLU_RS25310 0.48 -0.7 5,656,356 - PFLU_RS25310 0.48 -0.8 5,656,356 - PFLU_RS25310 0.48 +1.0 5,656,356 - PFLU_RS25310 0.48 +0.3 5,656,356 - PFLU_RS25310 0.48 +0.3 5,656,356 - PFLU_RS25310 0.48 -0.1 5,656,356 - PFLU_RS25310 0.48 +0.6 5,656,356 - PFLU_RS25310 0.48 -0.2 5,656,356 - PFLU_RS25310 0.48 +1.3 5,656,357 + PFLU_RS25310 0.48 +0.3 5,656,357 + PFLU_RS25310 0.48 -0.9 5,656,357 + PFLU_RS25310 0.48 +0.6 5,656,358 - PFLU_RS25310 0.48 +0.2 5,656,358 - PFLU_RS25310 0.48 +0.9 5,656,358 - PFLU_RS25310 0.48 +0.3 5,656,374 + PFLU_RS25310 0.51 +0.2 5,656,408 + PFLU_RS25310 0.57 -0.8 5,656,408 + PFLU_RS25310 0.57 -1.0 5,656,408 + PFLU_RS25310 0.57 +0.0 5,656,409 - PFLU_RS25310 0.57 +0.8 5,656,409 - PFLU_RS25310 0.57 -0.1 5,656,409 - PFLU_RS25310 0.57 +2.1 5,656,503 + PFLU_RS25310 0.74 +0.1 5,656,504 - PFLU_RS25310 0.74 -0.3 5,656,646 + -0.8 5,656,646 + -0.3 5,656,647 - +0.7 5,656,647 - +0.6 5,656,647 - +0.6 5,656,647 - +0.7 5,656,647 - -0.1 5,656,647 - +0.5 5,656,647 - +1.1 5,656,647 - +1.1 5,656,647 - -0.3 5,656,647 - +0.2 5,656,647 - -0.2 5,656,647 - +0.1 5,656,777 + PFLU_RS25315 0.33 +0.9 5,656,777 + PFLU_RS25315 0.33 +0.4 5,656,777 + PFLU_RS25315 0.33 +1.3 5,656,777 + PFLU_RS25315 0.33 +0.7 5,656,777 + PFLU_RS25315 0.33 +0.6 5,656,778 - PFLU_RS25315 0.34 +0.9 5,656,778 - PFLU_RS25315 0.34 +0.6 5,656,778 - PFLU_RS25315 0.34 -0.1 5,656,778 - PFLU_RS25315 0.34 +0.6 5,656,778 - PFLU_RS25315 0.34 +0.4 5,656,778 - PFLU_RS25315 0.34 -0.4 5,656,828 + PFLU_RS25315 0.47 +0.2 5,656,828 + PFLU_RS25315 0.47 +0.1 5,656,829 - PFLU_RS25315 0.47 +0.7 5,656,829 - PFLU_RS25315 0.47 -0.4 5,656,829 - PFLU_RS25315 0.47 -0.2 5,656,842 + PFLU_RS25315 0.51 -0.9 5,656,842 + PFLU_RS25315 0.51 +0.5 5,656,942 + PFLU_RS25315 0.77 +0.3 5,656,942 + PFLU_RS25315 0.77 +0.6 5,656,942 + PFLU_RS25315 0.77 +0.4 5,656,942 + PFLU_RS25315 0.77 -0.7 5,656,943 - PFLU_RS25315 0.77 -1.9 5,656,943 - PFLU_RS25315 0.77 +0.0 5,657,183 + PFLU_RS25320 0.46 -1.3 5,657,183 + PFLU_RS25320 0.46 +0.2 5,657,183 + PFLU_RS25320 0.46 -0.8 5,657,183 + PFLU_RS25320 0.46 -0.7 5,657,183 + PFLU_RS25320 0.46 +1.7 5,657,184 - PFLU_RS25320 0.47 +0.1 5,657,184 - PFLU_RS25320 0.47 +0.5 5,657,184 - PFLU_RS25320 0.47 +0.4 5,657,184 - PFLU_RS25320 0.47 +0.3 5,657,184 - PFLU_RS25320 0.47 +0.0 5,657,184 - PFLU_RS25320 0.47 +0.7 5,657,184 - PFLU_RS25320 0.47 +2.3 5,657,184 - PFLU_RS25320 0.47 -0.7 5,657,246 + -0.4 5,657,246 + -1.1 5,657,246 + -0.4 5,657,279 + +0.5 5,657,393 + PFLU_RS25325 0.37 +1.0 5,657,418 + PFLU_RS25325 0.43 +0.1 5,657,418 + PFLU_RS25325 0.43 +0.9 5,657,419 - PFLU_RS25325 0.43 +0.4 5,657,419 - PFLU_RS25325 0.43 +0.9 5,657,424 + PFLU_RS25325 0.44 +1.2 5,657,424 + PFLU_RS25325 0.44 -0.4 5,657,442 - PFLU_RS25325 0.48 +1.6 5,657,456 - PFLU_RS25325 0.51 -0.0 5,657,560 - PFLU_RS25325 0.74 +0.7 5,657,560 - PFLU_RS25325 0.74 -0.4 5,657,604 - PFLU_RS25325 0.84 +0.0 5,657,638 + +3.7 5,657,638 + +0.0 5,657,638 + -0.1 5,657,638 + -0.2 5,657,639 - -0.3 5,657,639 - +0.5 5,657,639 - -0.5 5,657,639 - +0.1 5,657,680 + +0.6 5,657,681 - -0.1 5,657,681 - -1.9 5,657,752 + -1.4 5,657,752 + -0.3 5,657,752 + -0.1 5,657,752 + -1.1 5,657,752 + -1.3 5,657,753 - +0.8 5,657,753 - +0.3 5,657,753 - +0.7 5,657,753 - +0.6 5,657,756 + +0.4 5,657,756 + +0.4 5,657,756 + +0.7 5,657,757 - -0.9 5,657,757 - +0.3 5,657,757 - +0.2 5,657,757 - +0.7 5,657,757 - -0.7
Or see this region's nucleotide sequence