Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25045

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,603,024	+		PFLU_RS25035	0.52	+0.3
5,603,024	+		PFLU_RS25035	0.52	-0.7
5,603,024	+		PFLU_RS25035	0.52	+1.0
5,603,024	+		PFLU_RS25035	0.52	+0.7
5,603,024	+		PFLU_RS25035	0.52	+0.6
5,603,024	+		PFLU_RS25035	0.52	+0.5
5,603,024	+		PFLU_RS25035	0.52	-0.1
5,603,024	+		PFLU_RS25035	0.52	-0.2
5,603,024	+		PFLU_RS25035	0.52	-0.2
5,603,025	-		PFLU_RS25035	0.52	+1.8
5,603,025	-		PFLU_RS25035	0.52	-0.0
5,603,025	-		PFLU_RS25035	0.52	+0.6
5,603,037	+		PFLU_RS25035	0.56	+0.6
5,603,038	-		PFLU_RS25035	0.56	+0.6
5,603,039	+		PFLU_RS25035	0.56	+0.2
5,603,040	-		PFLU_RS25035	0.56	+0.1
5,603,056	-		PFLU_RS25035	0.61	+0.2
5,603,218	+				-1.0
5,603,218	+				+0.2
5,603,218	+				-0.4
5,603,225	+				+0.1
5,603,225	+				+1.5
5,603,225	+				-2.2
5,603,226	-				-1.3
5,603,244	+				-0.5
5,603,307	+				+1.3
5,603,307	+				-0.3
5,603,307	+				-0.4
5,603,308	-				+0.8
5,603,308	-				-0.1
5,603,315	+				+0.4
5,603,315	+				+0.1
5,603,316	-				-2.0
5,603,316	-				+1.1
5,603,316	-				+1.4
5,603,316	-				-0.6
5,603,316	-				-1.9
5,603,316	-				+0.3
5,603,324	-				+0.4
5,603,324	-				+1.0
5,603,324	-				-2.0
5,603,324	-				-0.1
5,603,324	-				-0.3
5,603,410	-		PFLU_RS25040	0.25	+1.1
5,603,522	+		PFLU_RS25040	0.64	+0.4
5,603,523	-		PFLU_RS25040	0.65	+1.5
5,603,707	+				-0.1
5,603,707	+				+1.2
5,603,707	+				-0.0
5,603,707	+				+1.1
5,603,707	+				-0.0
5,603,708	-				-0.2
5,603,708	-				+0.3
5,603,708	-				+0.0
5,603,713	-				+0.5
5,603,757	+				-1.0
5,603,757	+				+1.3
5,603,757	+				+0.2
5,603,758	-				-1.5
5,603,785	-				-2.2
5,603,785	-				+1.1
5,603,785	-				-0.0
5,603,785	-				+0.4
5,603,785	-				-0.5
5,603,785	-				-2.0
5,603,827	+				+0.1
5,603,836	+				-0.1
5,603,837	-				+0.8
5,603,837	-				-1.2
5,603,891	-				+0.7
5,603,945	+				-0.2
5,603,946	-				+0.6
5,603,946	-				-0.0
5,603,950	+				+0.2
5,603,950	+				-1.2
5,603,951	-				-0.3
5,604,002	+				+1.3
5,604,018	-				-0.6
5,604,076	-		PFLU_RS25045	0.15	+0.3
5,604,079	+		PFLU_RS25045	0.15	-0.8
5,604,080	-		PFLU_RS25045	0.15	+0.2
5,604,149	+		PFLU_RS25045	0.27	+1.3
5,604,175	+		PFLU_RS25045	0.32	-1.2
5,604,180	-		PFLU_RS25045	0.32	+0.5
5,604,180	-		PFLU_RS25045	0.32	+0.5
5,604,180	-		PFLU_RS25045	0.32	-0.2
5,604,210	-		PFLU_RS25045	0.38	+0.2
5,604,272	+		PFLU_RS25045	0.48	+0.4
5,604,272	+		PFLU_RS25045	0.48	+0.8
5,604,273	-		PFLU_RS25045	0.48	-0.3
5,604,317	+		PFLU_RS25045	0.56	-0.9
5,604,394	+		PFLU_RS25045	0.69	+0.9
5,604,395	-		PFLU_RS25045	0.69	+1.1
5,604,395	-		PFLU_RS25045	0.69	+1.4
5,604,429	-		PFLU_RS25045	0.75	-1.0
5,604,429	-		PFLU_RS25045	0.75	-2.2
5,604,429	-		PFLU_RS25045	0.75	-2.6
5,604,429	-		PFLU_RS25045	0.75	+0.6
5,604,434	+		PFLU_RS25045	0.76	+1.7
5,604,435	-		PFLU_RS25045	0.76	-0.2
5,604,444	+		PFLU_RS25045	0.77	-0.4
5,604,448	-		PFLU_RS25045	0.78	+0.9
5,604,467	+		PFLU_RS25045	0.81	+0.1
5,604,533	+				-1.0
5,604,533	+				+1.6
5,604,534	-				+0.2
5,604,558	-				-0.8
5,604,558	-				-0.6
5,604,600	+				+0.5
5,604,600	+				-1.8
5,604,629	+				+0.7
5,604,654	+				+0.7
5,604,655	-				+0.1
5,604,658	-				+0.6
5,604,682	-				+1.3
5,604,698	-				+0.5
5,604,698	-				+1.0
5,604,700	+				+0.5
5,604,700	+				-0.2
5,604,700	+				-0.1
5,604,701	-				-0.5
5,604,701	-				+1.4
5,604,701	-				-0.1
5,604,738	+		PFLU_RS25050	0.13	+0.5
5,604,738	+		PFLU_RS25050	0.13	+1.6
5,604,835	+		PFLU_RS25050	0.30	+1.1
5,604,835	+		PFLU_RS25050	0.30	+1.6
5,604,835	+		PFLU_RS25050	0.30	+1.5
5,604,836	-		PFLU_RS25050	0.30	+1.3
5,604,867	+		PFLU_RS25050	0.35	+0.3
5,604,867	+		PFLU_RS25050	0.35	+1.5
5,604,868	-		PFLU_RS25050	0.35	-0.2
5,604,868	-		PFLU_RS25050	0.35	-1.2
5,604,868	-		PFLU_RS25050	0.35	-1.4
5,604,868	-		PFLU_RS25050	0.35	-0.2
5,604,878	+		PFLU_RS25050	0.37	+1.4
5,604,878	+		PFLU_RS25050	0.37	-1.7
5,604,878	+		PFLU_RS25050	0.37	+0.5
5,604,878	+		PFLU_RS25050	0.37	+0.3
5,604,879	-		PFLU_RS25050	0.37	-0.7
5,604,879	-		PFLU_RS25050	0.37	+1.3
5,604,879	-		PFLU_RS25050	0.37	+0.5
5,604,879	-		PFLU_RS25050	0.37	-0.3
5,604,879	-		PFLU_RS25050	0.37	+0.3
5,604,879	-		PFLU_RS25050	0.37	-0.1
5,604,879	-		PFLU_RS25050	0.37	+1.0
5,604,880	+		PFLU_RS25050	0.37	-0.6
5,604,880	+		PFLU_RS25050	0.37	-2.8
5,604,880	+		PFLU_RS25050	0.37	+0.1
5,604,880	+		PFLU_RS25050	0.37	+0.6
5,604,881	-		PFLU_RS25050	0.38	+1.3
5,604,881	-		PFLU_RS25050	0.38	-0.5
5,604,881	-		PFLU_RS25050	0.38	-0.4
5,605,094	+		PFLU_RS25050	0.74	-0.5
5,605,094	+		PFLU_RS25050	0.74	-0.5
5,605,094	+		PFLU_RS25050	0.74	-0.1
5,605,094	+		PFLU_RS25050	0.74	-1.2
5,605,094	+		PFLU_RS25050	0.74	-2.0
5,605,095	-		PFLU_RS25050	0.75	+0.7
5,605,095	-		PFLU_RS25050	0.75	-1.2
5,605,095	-		PFLU_RS25050	0.75	-0.5
5,605,143	+		PFLU_RS25050	0.83	+0.2
5,605,143	+		PFLU_RS25050	0.83	-0.5
5,605,144	-		PFLU_RS25050	0.83	+0.2
5,605,212	+				+0.4
5,605,212	+				+2.1
5,605,212	+				+0.2
5,605,212	+				+0.3
5,605,212	+				+1.6
5,605,212	+				+0.6
5,605,212	+				+0.4
5,605,212	+				+1.4
5,605,212	+				-0.3
5,605,213	-				+0.8
5,605,213	-				-1.6
5,605,213	-				+0.8
5,605,213	-				-0.6
5,605,213	-				+0.4
5,605,213	-				+0.7
5,605,213	-				+0.9
5,605,213	-				+0.3
5,605,213	-				+0.2
5,605,213	-				-0.4
5,605,213	-				-1.0
5,605,213	-				+0.4
5,605,213	-				+0.5
5,605,214	+				-2.2
5,605,214	+				-1.2
5,605,214	+				-0.2
5,605,214	+				+0.3
5,605,214	+				+0.3
5,605,215	-				+1.7
5,605,215	-				+1.1
5,605,215	-				+0.6
5,605,215	-				-0.2
5,605,215	-				+0.5
5,605,223	-				-0.5