Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25010 and PFLU_RS25015 are separated by 108 nucleotides PFLU_RS25015 and PFLU_RS25020 are separated by 30 nucleotides PFLU_RS25020 and PFLU_RS25025 are separated by 218 nucleotides PFLU_RS25025 and PFLU_RS25030 are separated by 8 nucleotides
PFLU_RS25010: PFLU_RS25010 - cupin domain-containing protein, at 5,599,780 to 5,600,160
_RS25010
PFLU_RS25015: PFLU_RS25015 - hypothetical protein, at 5,600,269 to 5,600,553
_RS25015
PFLU_RS25020: PFLU_RS25020 - hypothetical protein, at 5,600,584 to 5,601,480
_RS25020
PFLU_RS25025: PFLU_RS25025 - hypothetical protein, at 5,601,699 to 5,602,028
_RS25025
PFLU_RS25030: PFLU_RS25030 - LysE family translocator, at 5,602,037 to 5,602,672
_RS25030
Position (kb) 5600
5601
5602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5599.588 kb on + strand at 5599.641 kb on + strand at 5599.641 kb on + strand at 5599.642 kb on - strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.719 kb on - strand at 5599.719 kb on - strand at 5599.733 kb on + strand at 5599.733 kb on + strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.761 kb on - strand at 5599.883 kb on - strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.003 kb on - strand, within PFLU_RS25010 at 5600.003 kb on - strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.109 kb on + strand, within PFLU_RS25010 at 5600.133 kb on + strand at 5600.134 kb on - strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.185 kb on - strand at 5600.185 kb on - strand at 5600.190 kb on + strand at 5600.270 kb on + strand at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.384 kb on - strand, within PFLU_RS25015 at 5600.384 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.517 kb on + strand, within PFLU_RS25015 at 5600.517 kb on + strand, within PFLU_RS25015 at 5600.518 kb on - strand, within PFLU_RS25015 at 5600.546 kb on + strand at 5600.547 kb on - strand at 5600.559 kb on - strand at 5600.559 kb on - strand at 5600.692 kb on - strand, within PFLU_RS25020 at 5600.692 kb on - strand, within PFLU_RS25020 at 5600.746 kb on - strand, within PFLU_RS25020 at 5600.780 kb on + strand, within PFLU_RS25020 at 5600.780 kb on + strand, within PFLU_RS25020 at 5600.781 kb on - strand, within PFLU_RS25020 at 5600.781 kb on - strand, within PFLU_RS25020 at 5600.972 kb on + strand, within PFLU_RS25020 at 5601.022 kb on - strand, within PFLU_RS25020 at 5601.079 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.113 kb on + strand, within PFLU_RS25020 at 5601.114 kb on - strand, within PFLU_RS25020 at 5601.197 kb on + strand, within PFLU_RS25020 at 5601.197 kb on + strand, within PFLU_RS25020 at 5601.197 kb on + strand, within PFLU_RS25020 at 5601.198 kb on - strand, within PFLU_RS25020 at 5601.198 kb on - strand, within PFLU_RS25020 at 5601.198 kb on - strand, within PFLU_RS25020 at 5601.248 kb on + strand, within PFLU_RS25020 at 5601.248 kb on + strand, within PFLU_RS25020 at 5601.248 kb on + strand, within PFLU_RS25020 at 5601.249 kb on - strand, within PFLU_RS25020 at 5601.249 kb on - strand, within PFLU_RS25020 at 5601.249 kb on - strand, within PFLU_RS25020 at 5601.258 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.347 kb on + strand, within PFLU_RS25020 at 5601.348 kb on - strand, within PFLU_RS25020 at 5601.348 kb on - strand, within PFLU_RS25020 at 5601.370 kb on + strand, within PFLU_RS25020 at 5601.370 kb on + strand, within PFLU_RS25020 at 5601.498 kb on + strand at 5601.498 kb on + strand at 5601.498 kb on + strand at 5601.499 kb on - strand at 5601.506 kb on + strand at 5601.507 kb on - strand at 5601.569 kb on + strand at 5601.573 kb on + strand at 5601.574 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.629 kb on + strand at 5601.653 kb on + strand at 5601.653 kb on + strand at 5601.653 kb on + strand at 5601.653 kb on + strand at 5601.654 kb on - strand at 5601.654 kb on - strand at 5601.654 kb on - strand at 5601.685 kb on + strand at 5601.815 kb on - strand, within PFLU_RS25025 at 5601.815 kb on - strand, within PFLU_RS25025 at 5601.815 kb on - strand, within PFLU_RS25025 at 5601.815 kb on - strand, within PFLU_RS25025 at 5602.008 kb on + strand at 5602.106 kb on + strand, within PFLU_RS25030 at 5602.106 kb on + strand, within PFLU_RS25030 at 5602.192 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.281 kb on + strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.282 kb on - strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.416 kb on + strand, within PFLU_RS25030 at 5602.417 kb on - strand, within PFLU_RS25030 at 5602.417 kb on - strand, within PFLU_RS25030 at 5602.417 kb on - strand, within PFLU_RS25030 at 5602.425 kb on + strand, within PFLU_RS25030 at 5602.425 kb on + strand, within PFLU_RS25030 at 5602.426 kb on - strand, within PFLU_RS25030 at 5602.456 kb on - strand, within PFLU_RS25030 at 5602.456 kb on - strand, within PFLU_RS25030
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,599,588 + +0.5 5,599,641 + +0.9 5,599,641 + -1.1 5,599,642 - -0.2 5,599,670 + -1.1 5,599,670 + -1.6 5,599,670 + -0.5 5,599,670 + +0.1 5,599,676 + -0.9 5,599,676 + +0.1 5,599,676 + -0.8 5,599,676 + +0.2 5,599,677 - +0.3 5,599,677 - +0.2 5,599,677 - -1.9 5,599,677 - -1.0 5,599,677 - -0.5 5,599,677 - -0.6 5,599,718 + -0.2 5,599,718 + +0.8 5,599,718 + +1.4 5,599,718 + +0.2 5,599,718 + -1.7 5,599,718 + -0.2 5,599,719 - -2.7 5,599,719 - -2.2 5,599,733 + -1.2 5,599,733 + +0.2 5,599,734 - +0.9 5,599,734 - -0.6 5,599,734 - +0.8 5,599,734 - +1.9 5,599,761 - -0.1 5,599,883 - PFLU_RS25010 0.27 -0.4 5,600,002 + PFLU_RS25010 0.58 +1.0 5,600,002 + PFLU_RS25010 0.58 +0.5 5,600,002 + PFLU_RS25010 0.58 -1.0 5,600,002 + PFLU_RS25010 0.58 -0.8 5,600,002 + PFLU_RS25010 0.58 -0.5 5,600,002 + PFLU_RS25010 0.58 -0.1 5,600,002 + PFLU_RS25010 0.58 -0.0 5,600,003 - PFLU_RS25010 0.59 +0.4 5,600,003 - PFLU_RS25010 0.59 +0.9 5,600,023 + PFLU_RS25010 0.64 -1.0 5,600,023 + PFLU_RS25010 0.64 -0.3 5,600,023 + PFLU_RS25010 0.64 +1.5 5,600,023 + PFLU_RS25010 0.64 -0.3 5,600,023 + PFLU_RS25010 0.64 -0.7 5,600,023 + PFLU_RS25010 0.64 +1.1 5,600,023 + PFLU_RS25010 0.64 -0.6 5,600,023 + PFLU_RS25010 0.64 -0.0 5,600,024 - PFLU_RS25010 0.64 -1.5 5,600,024 - PFLU_RS25010 0.64 +0.4 5,600,024 - PFLU_RS25010 0.64 +1.0 5,600,024 - PFLU_RS25010 0.64 +3.1 5,600,109 + PFLU_RS25010 0.86 -0.5 5,600,133 + -0.6 5,600,134 - -1.0 5,600,184 + -0.3 5,600,184 + +0.9 5,600,184 + +1.2 5,600,184 + +0.3 5,600,184 + +0.1 5,600,184 + +0.8 5,600,184 + -0.7 5,600,185 - +1.4 5,600,185 - +0.3 5,600,190 + -0.1 5,600,270 + +0.2 5,600,383 + PFLU_RS25015 0.40 -0.6 5,600,383 + PFLU_RS25015 0.40 +0.4 5,600,383 + PFLU_RS25015 0.40 -2.1 5,600,383 + PFLU_RS25015 0.40 +0.8 5,600,384 - PFLU_RS25015 0.40 -0.6 5,600,384 - PFLU_RS25015 0.40 -0.8 5,600,495 - PFLU_RS25015 0.79 +0.0 5,600,495 - PFLU_RS25015 0.79 +0.1 5,600,495 - PFLU_RS25015 0.79 -0.5 5,600,517 + PFLU_RS25015 0.87 +0.0 5,600,517 + PFLU_RS25015 0.87 +0.5 5,600,518 - PFLU_RS25015 0.87 +0.0 5,600,546 + +1.1 5,600,547 - -0.1 5,600,559 - +0.1 5,600,559 - +0.1 5,600,692 - PFLU_RS25020 0.12 -1.2 5,600,692 - PFLU_RS25020 0.12 -0.6 5,600,746 - PFLU_RS25020 0.18 +0.9 5,600,780 + PFLU_RS25020 0.22 -0.7 5,600,780 + PFLU_RS25020 0.22 +0.4 5,600,781 - PFLU_RS25020 0.22 -0.9 5,600,781 - PFLU_RS25020 0.22 -0.1 5,600,972 + PFLU_RS25020 0.43 -0.4 5,601,022 - PFLU_RS25020 0.49 -0.9 5,601,079 + PFLU_RS25020 0.55 -0.2 5,601,083 + PFLU_RS25020 0.56 +0.3 5,601,083 + PFLU_RS25020 0.56 -0.4 5,601,083 + PFLU_RS25020 0.56 -0.0 5,601,083 + PFLU_RS25020 0.56 -1.5 5,601,083 + PFLU_RS25020 0.56 -1.0 5,601,084 - PFLU_RS25020 0.56 +0.0 5,601,084 - PFLU_RS25020 0.56 -2.4 5,601,084 - PFLU_RS25020 0.56 +0.6 5,601,084 - PFLU_RS25020 0.56 -1.7 5,601,084 - PFLU_RS25020 0.56 +0.7 5,601,084 - PFLU_RS25020 0.56 +1.3 5,601,084 - PFLU_RS25020 0.56 +0.0 5,601,084 - PFLU_RS25020 0.56 -0.6 5,601,084 - PFLU_RS25020 0.56 +1.0 5,601,113 + PFLU_RS25020 0.59 -1.0 5,601,114 - PFLU_RS25020 0.59 +0.5 5,601,197 + PFLU_RS25020 0.68 +0.0 5,601,197 + PFLU_RS25020 0.68 -0.4 5,601,197 + PFLU_RS25020 0.68 +0.7 5,601,198 - PFLU_RS25020 0.68 +0.6 5,601,198 - PFLU_RS25020 0.68 +1.0 5,601,198 - PFLU_RS25020 0.68 -0.6 5,601,248 + PFLU_RS25020 0.74 -1.0 5,601,248 + PFLU_RS25020 0.74 -0.6 5,601,248 + PFLU_RS25020 0.74 +0.2 5,601,249 - PFLU_RS25020 0.74 +0.4 5,601,249 - PFLU_RS25020 0.74 +0.9 5,601,249 - PFLU_RS25020 0.74 -0.1 5,601,258 + PFLU_RS25020 0.75 -0.6 5,601,347 + PFLU_RS25020 0.85 +0.7 5,601,347 + PFLU_RS25020 0.85 -0.3 5,601,347 + PFLU_RS25020 0.85 -1.1 5,601,347 + PFLU_RS25020 0.85 -2.7 5,601,347 + PFLU_RS25020 0.85 +0.5 5,601,347 + PFLU_RS25020 0.85 +1.0 5,601,347 + PFLU_RS25020 0.85 +0.7 5,601,348 - PFLU_RS25020 0.85 -0.1 5,601,348 - PFLU_RS25020 0.85 +0.3 5,601,370 + PFLU_RS25020 0.88 +0.2 5,601,370 + PFLU_RS25020 0.88 -0.7 5,601,498 + +1.0 5,601,498 + +0.9 5,601,498 + -1.5 5,601,499 - -0.6 5,601,506 + +0.4 5,601,507 - +0.5 5,601,569 + +1.5 5,601,573 + -0.9 5,601,574 - -0.3 5,601,577 - -0.4 5,601,577 - +0.2 5,601,577 - +1.1 5,601,629 + -0.1 5,601,653 + +0.4 5,601,653 + +0.3 5,601,653 + +0.6 5,601,653 + -0.4 5,601,654 - +0.3 5,601,654 - +0.8 5,601,654 - -0.7 5,601,685 + +0.7 5,601,815 - PFLU_RS25025 0.35 -1.3 5,601,815 - PFLU_RS25025 0.35 -0.1 5,601,815 - PFLU_RS25025 0.35 +1.1 5,601,815 - PFLU_RS25025 0.35 +0.1 5,602,008 + -0.8 5,602,106 + PFLU_RS25030 0.11 +0.3 5,602,106 + PFLU_RS25030 0.11 -0.9 5,602,192 + PFLU_RS25030 0.24 +0.9 5,602,281 + PFLU_RS25030 0.38 +0.5 5,602,281 + PFLU_RS25030 0.38 -2.0 5,602,281 + PFLU_RS25030 0.38 +0.6 5,602,281 + PFLU_RS25030 0.38 -1.4 5,602,281 + PFLU_RS25030 0.38 +0.0 5,602,281 + PFLU_RS25030 0.38 -0.5 5,602,281 + PFLU_RS25030 0.38 +0.1 5,602,281 + PFLU_RS25030 0.38 +0.5 5,602,281 + PFLU_RS25030 0.38 -1.1 5,602,281 + PFLU_RS25030 0.38 -0.3 5,602,281 + PFLU_RS25030 0.38 -0.1 5,602,281 + PFLU_RS25030 0.38 -0.2 5,602,282 - PFLU_RS25030 0.39 +1.4 5,602,282 - PFLU_RS25030 0.39 -0.4 5,602,282 - PFLU_RS25030 0.39 -1.4 5,602,282 - PFLU_RS25030 0.39 -0.5 5,602,282 - PFLU_RS25030 0.39 +0.3 5,602,282 - PFLU_RS25030 0.39 +0.3 5,602,282 - PFLU_RS25030 0.39 +0.1 5,602,282 - PFLU_RS25030 0.39 +1.1 5,602,282 - PFLU_RS25030 0.39 +0.2 5,602,282 - PFLU_RS25030 0.39 +0.3 5,602,416 + PFLU_RS25030 0.60 -0.7 5,602,416 + PFLU_RS25030 0.60 -0.3 5,602,416 + PFLU_RS25030 0.60 +0.1 5,602,416 + PFLU_RS25030 0.60 +0.9 5,602,416 + PFLU_RS25030 0.60 -2.0 5,602,416 + PFLU_RS25030 0.60 +0.9 5,602,416 + PFLU_RS25030 0.60 +0.2 5,602,416 + PFLU_RS25030 0.60 +0.4 5,602,416 + PFLU_RS25030 0.60 -0.4 5,602,417 - PFLU_RS25030 0.60 -0.0 5,602,417 - PFLU_RS25030 0.60 -0.7 5,602,417 - PFLU_RS25030 0.60 -1.6 5,602,425 + PFLU_RS25030 0.61 -0.6 5,602,425 + PFLU_RS25030 0.61 +0.4 5,602,426 - PFLU_RS25030 0.61 +0.2 5,602,456 - PFLU_RS25030 0.66 +0.0 5,602,456 - PFLU_RS25030 0.66 -0.6
Or see this region's nucleotide sequence