Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24990 and PFLU_RS24995 are separated by 40 nucleotides PFLU_RS24995 and PFLU_RS25000 are separated by 23 nucleotides PFLU_RS25000 and PFLU_RS25005 are separated by 9 nucleotides
PFLU_RS24990: PFLU_RS24990 - chemotaxis protein CheA, at 5,595,561 to 5,597,600
_RS24990
PFLU_RS24995: PFLU_RS24995 - STAS domain-containing protein, at 5,597,641 to 5,597,928
_RS24995
PFLU_RS25000: PFLU_RS25000 - response regulator, at 5,597,952 to 5,598,320
_RS25000
PFLU_RS25005: PFLU_RS25005 - methyl-accepting chemotaxis protein, at 5,598,330 to 5,599,541
_RS25005
Position (kb) 5597
5598
5599 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5596.981 kb on + strand, within PFLU_RS24990 at 5596.982 kb on - strand, within PFLU_RS24990 at 5596.982 kb on - strand, within PFLU_RS24990 at 5596.982 kb on - strand, within PFLU_RS24990 at 5596.982 kb on - strand, within PFLU_RS24990 at 5597.132 kb on + strand, within PFLU_RS24990 at 5597.213 kb on - strand, within PFLU_RS24990 at 5597.213 kb on - strand, within PFLU_RS24990 at 5597.398 kb on + strand at 5597.400 kb on - strand at 5597.643 kb on - strand at 5597.643 kb on - strand at 5597.861 kb on + strand, within PFLU_RS24995 at 5597.861 kb on + strand, within PFLU_RS24995 at 5597.862 kb on - strand, within PFLU_RS24995 at 5597.862 kb on - strand, within PFLU_RS24995 at 5597.862 kb on - strand, within PFLU_RS24995 at 5597.862 kb on - strand, within PFLU_RS24995 at 5597.862 kb on - strand, within PFLU_RS24995 at 5598.100 kb on + strand, within PFLU_RS25000 at 5598.100 kb on + strand, within PFLU_RS25000 at 5598.100 kb on + strand, within PFLU_RS25000 at 5598.100 kb on + strand, within PFLU_RS25000 at 5598.101 kb on - strand, within PFLU_RS25000 at 5598.101 kb on - strand, within PFLU_RS25000 at 5598.101 kb on - strand, within PFLU_RS25000 at 5598.101 kb on - strand, within PFLU_RS25000 at 5598.101 kb on - strand, within PFLU_RS25000 at 5598.262 kb on - strand, within PFLU_RS25000 at 5598.262 kb on - strand, within PFLU_RS25000 at 5598.303 kb on + strand at 5598.304 kb on - strand at 5598.304 kb on - strand at 5598.304 kb on - strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.306 kb on + strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.307 kb on - strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.325 kb on + strand at 5598.326 kb on - strand at 5598.326 kb on - strand at 5598.326 kb on - strand at 5598.326 kb on - strand at 5598.331 kb on + strand at 5598.331 kb on + strand at 5598.332 kb on - strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.409 kb on + strand at 5598.410 kb on - strand at 5598.410 kb on - strand at 5598.410 kb on - strand at 5598.410 kb on - strand at 5598.410 kb on - strand at 5598.410 kb on - strand at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.570 kb on + strand, within PFLU_RS25005 at 5598.571 kb on - strand, within PFLU_RS25005 at 5598.571 kb on - strand, within PFLU_RS25005 at 5598.598 kb on + strand, within PFLU_RS25005 at 5598.598 kb on + strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.599 kb on - strand, within PFLU_RS25005 at 5598.677 kb on + strand, within PFLU_RS25005 at 5598.678 kb on - strand, within PFLU_RS25005 at 5598.678 kb on - strand, within PFLU_RS25005 at 5598.749 kb on + strand, within PFLU_RS25005 at 5598.749 kb on + strand, within PFLU_RS25005 at 5598.750 kb on - strand, within PFLU_RS25005 at 5598.809 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.965 kb on - strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.281 kb on + strand, within PFLU_RS25005 at 5599.281 kb on + strand, within PFLU_RS25005 at 5599.282 kb on - strand, within PFLU_RS25005 at 5599.282 kb on - strand, within PFLU_RS25005 at 5599.290 kb on - strand, within PFLU_RS25005
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,596,981 + PFLU_RS24990 0.70 -1.3 5,596,982 - PFLU_RS24990 0.70 -1.2 5,596,982 - PFLU_RS24990 0.70 +1.7 5,596,982 - PFLU_RS24990 0.70 -0.8 5,596,982 - PFLU_RS24990 0.70 -0.0 5,597,132 + PFLU_RS24990 0.77 +0.3 5,597,213 - PFLU_RS24990 0.81 -0.1 5,597,213 - PFLU_RS24990 0.81 +0.7 5,597,398 + +0.8 5,597,400 - -0.4 5,597,643 - +0.6 5,597,643 - -0.2 5,597,861 + PFLU_RS24995 0.76 -0.0 5,597,861 + PFLU_RS24995 0.76 -0.5 5,597,862 - PFLU_RS24995 0.77 -2.6 5,597,862 - PFLU_RS24995 0.77 +0.2 5,597,862 - PFLU_RS24995 0.77 +1.3 5,597,862 - PFLU_RS24995 0.77 -2.6 5,597,862 - PFLU_RS24995 0.77 +0.8 5,598,100 + PFLU_RS25000 0.40 +0.2 5,598,100 + PFLU_RS25000 0.40 +0.6 5,598,100 + PFLU_RS25000 0.40 -1.0 5,598,100 + PFLU_RS25000 0.40 +0.4 5,598,101 - PFLU_RS25000 0.40 +1.5 5,598,101 - PFLU_RS25000 0.40 +0.5 5,598,101 - PFLU_RS25000 0.40 +1.5 5,598,101 - PFLU_RS25000 0.40 +1.6 5,598,101 - PFLU_RS25000 0.40 -1.1 5,598,262 - PFLU_RS25000 0.84 +0.3 5,598,262 - PFLU_RS25000 0.84 +0.4 5,598,303 + -1.1 5,598,304 - -0.6 5,598,304 - +0.3 5,598,304 - -0.0 5,598,306 + +0.9 5,598,306 + -0.3 5,598,306 + +0.6 5,598,306 + -0.2 5,598,306 + -2.4 5,598,306 + -0.2 5,598,306 + +0.8 5,598,306 + -1.2 5,598,306 + -0.5 5,598,306 + -0.1 5,598,307 - -2.1 5,598,307 - +0.6 5,598,307 - +0.1 5,598,307 - +0.7 5,598,307 - +0.9 5,598,307 - -2.3 5,598,307 - +0.3 5,598,307 - +0.3 5,598,307 - +1.2 5,598,307 - -0.0 5,598,307 - -0.1 5,598,307 - -0.2 5,598,307 - +0.4 5,598,307 - -0.4 5,598,307 - +0.5 5,598,307 - -0.1 5,598,307 - +0.0 5,598,307 - +1.9 5,598,307 - +0.3 5,598,307 - +0.7 5,598,307 - +1.7 5,598,307 - -0.9 5,598,307 - -1.5 5,598,307 - -0.3 5,598,325 + -1.0 5,598,325 + -0.0 5,598,325 + -0.0 5,598,325 + +0.1 5,598,325 + +0.6 5,598,325 + -0.4 5,598,325 + +0.5 5,598,325 + +2.4 5,598,325 + -0.3 5,598,325 + +0.7 5,598,325 + +0.5 5,598,326 - -0.7 5,598,326 - -1.4 5,598,326 - +0.1 5,598,326 - -1.3 5,598,331 + +1.8 5,598,331 + -1.9 5,598,332 - -0.8 5,598,409 + +1.5 5,598,409 + -0.9 5,598,409 + -0.2 5,598,409 + +1.1 5,598,409 + -0.5 5,598,409 + +0.4 5,598,409 + -0.1 5,598,409 + -1.6 5,598,409 + +0.0 5,598,409 + -0.3 5,598,409 + +0.1 5,598,409 + +0.3 5,598,409 + -0.6 5,598,409 + -0.3 5,598,410 - -2.1 5,598,410 - +1.3 5,598,410 - +0.6 5,598,410 - +0.1 5,598,410 - -0.3 5,598,410 - -0.5 5,598,570 + PFLU_RS25005 0.20 -2.0 5,598,570 + PFLU_RS25005 0.20 +1.2 5,598,570 + PFLU_RS25005 0.20 +0.3 5,598,570 + PFLU_RS25005 0.20 +0.5 5,598,570 + PFLU_RS25005 0.20 -0.2 5,598,570 + PFLU_RS25005 0.20 +0.5 5,598,571 - PFLU_RS25005 0.20 +1.3 5,598,571 - PFLU_RS25005 0.20 -0.0 5,598,598 + PFLU_RS25005 0.22 -1.9 5,598,598 + PFLU_RS25005 0.22 -0.2 5,598,599 - PFLU_RS25005 0.22 +0.1 5,598,599 - PFLU_RS25005 0.22 -0.5 5,598,599 - PFLU_RS25005 0.22 -2.4 5,598,599 - PFLU_RS25005 0.22 +1.0 5,598,599 - PFLU_RS25005 0.22 +1.8 5,598,599 - PFLU_RS25005 0.22 +0.9 5,598,599 - PFLU_RS25005 0.22 +1.1 5,598,599 - PFLU_RS25005 0.22 -0.0 5,598,599 - PFLU_RS25005 0.22 +0.2 5,598,677 + PFLU_RS25005 0.29 -0.4 5,598,678 - PFLU_RS25005 0.29 -0.8 5,598,678 - PFLU_RS25005 0.29 -0.1 5,598,749 + PFLU_RS25005 0.35 +0.3 5,598,749 + PFLU_RS25005 0.35 -1.2 5,598,750 - PFLU_RS25005 0.35 -0.3 5,598,809 + PFLU_RS25005 0.40 +0.2 5,598,964 + PFLU_RS25005 0.52 -0.4 5,598,964 + PFLU_RS25005 0.52 -1.3 5,598,964 + PFLU_RS25005 0.52 +0.5 5,598,965 - PFLU_RS25005 0.52 -0.9 5,599,131 + PFLU_RS25005 0.66 -0.2 5,599,131 + PFLU_RS25005 0.66 -0.1 5,599,131 + PFLU_RS25005 0.66 -1.9 5,599,131 + PFLU_RS25005 0.66 +0.4 5,599,132 - PFLU_RS25005 0.66 +1.5 5,599,132 - PFLU_RS25005 0.66 +0.4 5,599,132 - PFLU_RS25005 0.66 -0.6 5,599,254 + PFLU_RS25005 0.76 +0.4 5,599,254 + PFLU_RS25005 0.76 -0.4 5,599,254 + PFLU_RS25005 0.76 +1.1 5,599,254 + PFLU_RS25005 0.76 +1.7 5,599,254 + PFLU_RS25005 0.76 +0.8 5,599,255 - PFLU_RS25005 0.76 -0.7 5,599,255 - PFLU_RS25005 0.76 +1.2 5,599,255 - PFLU_RS25005 0.76 +0.3 5,599,281 + PFLU_RS25005 0.78 -0.6 5,599,281 + PFLU_RS25005 0.78 +0.5 5,599,282 - PFLU_RS25005 0.79 -1.4 5,599,282 - PFLU_RS25005 0.79 -0.4 5,599,290 - PFLU_RS25005 0.79 -1.7
Or see this region's nucleotide sequence