Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21540

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,856,297	+		PFLU_RS21530	0.85	-0.4
4,856,297	+		PFLU_RS21530	0.85	+1.4
4,856,297	+		PFLU_RS21530	0.85	-1.4
4,856,382	+				+0.2
4,856,382	+				-0.7
4,856,382	+				-1.4
4,856,383	-				+0.7
4,856,383	-				+0.5
4,856,383	-				+0.3
4,856,383	-				+0.3
4,856,383	-				+0.9
4,856,442	-				+0.1
4,856,455	+				-0.2
4,856,456	-				+1.0
4,856,456	-				+0.9
4,856,496	+				-0.2
4,856,496	+				-0.7
4,856,497	-				+0.8
4,856,497	-				-0.0
4,856,499	+				-0.2
4,856,500	-				+0.2
4,856,652	+		PFLU_RS21535	0.23	-1.8
4,856,652	+		PFLU_RS21535	0.23	+0.7
4,856,652	+		PFLU_RS21535	0.23	-0.5
4,856,653	-		PFLU_RS21535	0.23	-0.7
4,856,653	-		PFLU_RS21535	0.23	+0.8
4,856,653	-		PFLU_RS21535	0.23	-0.6
4,856,679	-		PFLU_RS21535	0.27	-0.4
4,856,679	-		PFLU_RS21535	0.27	-0.6
4,856,679	-		PFLU_RS21535	0.27	-0.4
4,856,679	-		PFLU_RS21535	0.27	+0.0
4,856,679	-		PFLU_RS21535	0.27	-0.2
4,856,700	+		PFLU_RS21535	0.30	+0.6
4,856,700	+		PFLU_RS21535	0.30	+0.9
4,856,700	+		PFLU_RS21535	0.30	-0.8
4,856,700	+		PFLU_RS21535	0.30	+0.0
4,856,700	+		PFLU_RS21535	0.30	+1.1
4,856,701	-		PFLU_RS21535	0.31	-0.4
4,856,701	-		PFLU_RS21535	0.31	+0.8
4,856,701	-		PFLU_RS21535	0.31	-0.6
4,856,701	-		PFLU_RS21535	0.31	-0.6
4,856,701	-		PFLU_RS21535	0.31	-0.2
4,856,701	-		PFLU_RS21535	0.31	-2.3
4,856,701	-		PFLU_RS21535	0.31	-0.1
4,856,701	-		PFLU_RS21535	0.31	+1.4
4,856,701	-		PFLU_RS21535	0.31	-2.6
4,856,701	-		PFLU_RS21535	0.31	-0.1
4,856,761	-		PFLU_RS21535	0.40	-0.7
4,856,761	-		PFLU_RS21535	0.40	+0.6
4,856,889	+		PFLU_RS21535	0.61	+0.7
4,856,889	+		PFLU_RS21535	0.61	+0.5
4,856,889	+		PFLU_RS21535	0.61	-0.2
4,856,889	+		PFLU_RS21535	0.61	-1.2
4,856,890	-		PFLU_RS21535	0.61	-0.1
4,856,890	-		PFLU_RS21535	0.61	-0.2
4,856,890	-		PFLU_RS21535	0.61	-0.2
4,856,890	-		PFLU_RS21535	0.61	-0.6
4,857,146	+				-1.9
4,857,147	-				+0.5
4,857,147	-				-0.2
4,857,176	-				+1.0
4,857,381	-				-0.9
4,857,381	-				+1.4
4,857,396	-				-1.4
4,857,396	-				-1.0
4,857,458	+				+0.5
4,857,458	+				+0.9
4,857,484	+		PFLU_RS21540	0.11	-1.7
4,857,484	+		PFLU_RS21540	0.11	-1.5
4,857,485	-		PFLU_RS21540	0.11	-0.4
4,857,485	-		PFLU_RS21540	0.11	-0.4
4,857,722	+		PFLU_RS21540	0.24	+0.5
4,857,723	-		PFLU_RS21540	0.25	+0.9
4,857,851	+		PFLU_RS21540	0.32	+1.0
4,857,852	-		PFLU_RS21540	0.32	-0.1
4,857,852	-		PFLU_RS21540	0.32	-0.6
4,857,852	-		PFLU_RS21540	0.32	-0.5
4,857,886	+		PFLU_RS21540	0.34	-1.1
4,857,886	+		PFLU_RS21540	0.34	-2.6
4,857,886	+		PFLU_RS21540	0.34	+0.6
4,857,886	+		PFLU_RS21540	0.34	-1.2
4,857,887	-		PFLU_RS21540	0.34	-0.3
4,857,887	-		PFLU_RS21540	0.34	-0.0
4,857,950	+		PFLU_RS21540	0.37	+1.5
4,857,950	+		PFLU_RS21540	0.37	+1.3
4,857,951	-		PFLU_RS21540	0.37	-0.2
4,858,067	+		PFLU_RS21540	0.44	-0.1
4,858,068	-		PFLU_RS21540	0.44	-0.1
4,858,091	+		PFLU_RS21540	0.45	-1.6
4,858,091	+		PFLU_RS21540	0.45	-1.6
4,858,091	+		PFLU_RS21540	0.45	+0.1
4,858,092	-		PFLU_RS21540	0.45	+0.1
4,858,158	+		PFLU_RS21540	0.49	-0.7
4,858,159	-		PFLU_RS21540	0.49	-1.5
4,858,199	+		PFLU_RS21540	0.51	-0.1
4,858,199	+		PFLU_RS21540	0.51	+0.1
4,858,199	+		PFLU_RS21540	0.51	-0.2
4,858,200	-		PFLU_RS21540	0.51	-0.4
4,858,200	-		PFLU_RS21540	0.51	-0.4
4,858,200	-		PFLU_RS21540	0.51	-0.1
4,858,200	-		PFLU_RS21540	0.51	-0.8
4,858,349	+		PFLU_RS21540	0.60	+0.9
4,858,349	+		PFLU_RS21540	0.60	+1.3
4,858,349	+		PFLU_RS21540	0.60	-1.0
4,858,349	+		PFLU_RS21540	0.60	+0.5
4,858,350	-		PFLU_RS21540	0.60	+0.5
4,858,391	+		PFLU_RS21540	0.62	+3.2
4,858,391	+		PFLU_RS21540	0.62	+0.3
4,858,391	+		PFLU_RS21540	0.62	+1.9
4,858,391	+		PFLU_RS21540	0.62	+0.3
4,858,392	-		PFLU_RS21540	0.62	-0.7
4,858,392	-		PFLU_RS21540	0.62	-0.8
4,858,392	-		PFLU_RS21540	0.62	+0.2
4,858,392	-		PFLU_RS21540	0.62	+0.3
4,858,567	-		PFLU_RS21540	0.72	-0.2
4,858,809	-		PFLU_RS21540	0.86	+0.3
4,858,809	-		PFLU_RS21540	0.86	+1.2
4,858,809	-		PFLU_RS21540	0.86	+0.5
4,858,905	-				+0.0
4,858,908	+				-0.2
4,858,909	-				+0.1
4,859,431	+		PFLU_RS21545	0.40	-1.3
4,859,543	+		PFLU_RS21545	0.53	+0.0
4,859,544	-		PFLU_RS21545	0.53	+1.6
4,859,685	+		PFLU_RS21545	0.69	-0.4
4,859,685	+		PFLU_RS21545	0.69	+1.2
4,859,685	+		PFLU_RS21545	0.69	-0.6
4,859,685	+		PFLU_RS21545	0.69	-0.6
4,859,685	+		PFLU_RS21545	0.69	-0.7
4,859,685	+		PFLU_RS21545	0.69	+0.1
4,859,685	+		PFLU_RS21545	0.69	+0.4
4,859,685	+		PFLU_RS21545	0.69	+0.3
4,859,685	+		PFLU_RS21545	0.69	-0.6
4,859,685	+		PFLU_RS21545	0.69	+1.3
4,859,685	+		PFLU_RS21545	0.69	-0.5
4,859,685	+		PFLU_RS21545	0.69	-0.1
4,859,685	+		PFLU_RS21545	0.69	-2.2
4,859,686	-		PFLU_RS21545	0.70	+0.8
4,859,686	-		PFLU_RS21545	0.70	+0.8
4,859,686	-		PFLU_RS21545	0.70	-0.2
4,859,686	-		PFLU_RS21545	0.70	-0.4
4,859,686	-		PFLU_RS21545	0.70	-0.1
4,859,686	-		PFLU_RS21545	0.70	+0.3
4,859,686	-		PFLU_RS21545	0.70	-0.9
4,859,686	-		PFLU_RS21545	0.70	-0.9
4,859,686	-		PFLU_RS21545	0.70	-0.6
4,859,686	-		PFLU_RS21545	0.70	+0.7
4,859,686	-		PFLU_RS21545	0.70	-0.3
4,859,686	-		PFLU_RS21545	0.70	-0.8
4,859,686	-		PFLU_RS21545	0.70	+0.7
4,859,807	+		PFLU_RS21545	0.83	+0.3
4,859,919	+				+0.6
4,859,919	+				+0.4
4,859,949	+				+0.6
4,859,949	+				+0.8
4,859,950	-				+1.1