Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17865

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,056,191	+		PFLU_RS17860	0.22	-0.6
4,056,191	+		PFLU_RS17860	0.22	+0.2
4,056,191	+		PFLU_RS17860	0.22	+1.6
4,056,192	-		PFLU_RS17860	0.22	+0.4
4,056,192	-		PFLU_RS17860	0.22	+1.4
4,056,192	-		PFLU_RS17860	0.22	-2.2
4,056,192	-		PFLU_RS17860	0.22	-0.7
4,056,314	+		PFLU_RS17860	0.33	+1.3
4,056,315	-		PFLU_RS17860	0.33	-0.5
4,056,315	-		PFLU_RS17860	0.33	+0.2
4,056,336	-		PFLU_RS17860	0.35	+0.4
4,056,345	-		PFLU_RS17860	0.36	+0.0
4,056,345	-		PFLU_RS17860	0.36	-0.8
4,056,368	+		PFLU_RS17860	0.38	-1.1
4,056,368	+		PFLU_RS17860	0.38	-0.9
4,056,368	+		PFLU_RS17860	0.38	+0.2
4,056,368	+		PFLU_RS17860	0.38	+1.2
4,056,368	+		PFLU_RS17860	0.38	-0.2
4,056,369	-		PFLU_RS17860	0.38	+0.1
4,056,369	-		PFLU_RS17860	0.38	-0.0
4,056,422	+		PFLU_RS17860	0.43	+0.4
4,056,623	+		PFLU_RS17860	0.61	+0.2
4,056,623	+		PFLU_RS17860	0.61	+0.8
4,056,623	+		PFLU_RS17860	0.61	-1.7
4,056,623	+		PFLU_RS17860	0.61	+0.4
4,056,623	+		PFLU_RS17860	0.61	+0.4
4,056,624	-		PFLU_RS17860	0.61	-0.1
4,056,624	-		PFLU_RS17860	0.61	+0.0
4,056,624	-		PFLU_RS17860	0.61	-0.2
4,056,631	+		PFLU_RS17860	0.61	+0.8
4,056,632	-		PFLU_RS17860	0.62	+0.9
4,056,698	+		PFLU_RS17860	0.67	-1.5
4,056,698	+		PFLU_RS17860	0.67	-1.0
4,056,698	+		PFLU_RS17860	0.67	-1.4
4,056,699	-		PFLU_RS17860	0.68	+0.6
4,056,805	-		PFLU_RS17860	0.77	+1.2
4,056,806	+		PFLU_RS17860	0.77	-0.2
4,056,806	+		PFLU_RS17860	0.77	+1.0
4,056,806	+		PFLU_RS17860	0.77	-2.0
4,056,806	+		PFLU_RS17860	0.77	+1.4
4,056,806	+		PFLU_RS17860	0.77	+0.5
4,056,806	+		PFLU_RS17860	0.77	-0.2
4,056,806	+		PFLU_RS17860	0.77	-0.3
4,056,806	+		PFLU_RS17860	0.77	+0.2
4,056,806	+		PFLU_RS17860	0.77	-1.3
4,056,806	+		PFLU_RS17860	0.77	-0.1
4,056,807	-		PFLU_RS17860	0.77	+0.2
4,056,807	-		PFLU_RS17860	0.77	+2.4
4,056,807	-		PFLU_RS17860	0.77	-0.5
4,056,846	+		PFLU_RS17860	0.81	-1.6
4,056,847	-		PFLU_RS17860	0.81	+1.6
4,056,847	-		PFLU_RS17860	0.81	-0.4
4,056,847	-		PFLU_RS17860	0.81	-1.2
4,056,848	+		PFLU_RS17860	0.81	-0.4
4,056,848	+		PFLU_RS17860	0.81	+0.1
4,056,848	+		PFLU_RS17860	0.81	+0.4
4,056,849	-		PFLU_RS17860	0.81	+0.0
4,056,849	-		PFLU_RS17860	0.81	-1.1
4,056,849	-		PFLU_RS17860	0.81	-0.0
4,056,875	+		PFLU_RS17860	0.83	+0.8
4,056,984	+				-0.0
4,056,984	+				-0.4
4,056,985	-				-0.2
4,056,985	-				-0.1
4,056,985	-				-0.7
4,056,986	+				-0.2
4,056,986	+				+0.5
4,057,066	-				+0.4
4,057,066	-				-0.2
4,057,066	-				-0.6
4,057,149	+				+0.0
4,057,149	+				-1.6
4,057,149	+				-0.9
4,057,345	+		PFLU_RS17865	0.82	-0.0
4,057,345	+		PFLU_RS17865	0.82	-0.7
4,057,345	+		PFLU_RS17865	0.82	+0.8
4,057,346	-		PFLU_RS17865	0.82	-0.4
4,057,346	-		PFLU_RS17865	0.82	-0.2
4,057,366	+				-0.6
4,057,438	+				-1.0
4,057,582	-				+2.0
4,057,582	-				-0.7
4,057,620	+				-0.4
4,057,620	+				-2.1
4,057,621	-				-1.6
4,057,621	-				+1.1
4,057,701	+				+1.4
4,057,701	+				+0.3
4,057,701	+				+0.6
4,057,701	+				+1.0
4,057,701	+				-0.2
4,057,701	+				+0.7
4,057,701	+				+0.2
4,057,701	+				-0.7
4,057,701	+				-0.4
4,057,701	+				-0.6
4,057,701	+				-1.2
4,057,701	+				+0.2
4,057,701	+				+1.0
4,057,702	-				-0.4
4,057,702	-				-0.3
4,057,702	-				+1.1
4,057,702	-				-0.3
4,057,702	-				+0.6
4,057,702	-				-0.9
4,057,702	-				+1.1
4,057,702	-				+0.9
4,057,702	-				-0.4
4,057,702	-				+0.9
4,057,702	-				-1.9
4,057,702	-				-0.5
4,057,728	+		PFLU_RS17870	0.11	+0.9
4,057,729	-		PFLU_RS17870	0.11	+0.7
4,057,729	-		PFLU_RS17870	0.11	-0.9
4,057,878	+		PFLU_RS17870	0.22	+0.6
4,057,878	+		PFLU_RS17870	0.22	+0.6
4,057,878	+		PFLU_RS17870	0.22	+0.7
4,057,878	+		PFLU_RS17870	0.22	-0.8
4,057,878	+		PFLU_RS17870	0.22	+0.5
4,057,878	+		PFLU_RS17870	0.22	+0.8
4,057,878	+		PFLU_RS17870	0.22	+0.2
4,057,878	+		PFLU_RS17870	0.22	+0.8
4,057,878	+		PFLU_RS17870	0.22	+0.2
4,057,878	+		PFLU_RS17870	0.22	-2.4
4,057,878	+		PFLU_RS17870	0.22	+1.5
4,057,878	+		PFLU_RS17870	0.22	-1.2
4,057,878	+		PFLU_RS17870	0.22	+0.8
4,057,879	-		PFLU_RS17870	0.22	-0.2
4,057,879	-		PFLU_RS17870	0.22	+0.4
4,057,879	-		PFLU_RS17870	0.22	+0.6
4,057,879	-		PFLU_RS17870	0.22	-1.6
4,057,879	-		PFLU_RS17870	0.22	+0.7
4,057,879	-		PFLU_RS17870	0.22	+0.6
4,057,879	-		PFLU_RS17870	0.22	-2.4
4,057,879	-		PFLU_RS17870	0.22	+0.3
4,057,879	-		PFLU_RS17870	0.22	-0.9
4,057,879	-		PFLU_RS17870	0.22	-0.3
4,057,879	-		PFLU_RS17870	0.22	-1.6
4,057,879	-		PFLU_RS17870	0.22	-0.6
4,057,879	-		PFLU_RS17870	0.22	-1.2
4,057,879	-		PFLU_RS17870	0.22	+0.6
4,057,879	-		PFLU_RS17870	0.22	+1.4
4,057,879	-		PFLU_RS17870	0.22	+0.0
4,057,879	-		PFLU_RS17870	0.22	+0.4
4,057,939	+		PFLU_RS17870	0.26	-0.2
4,057,939	+		PFLU_RS17870	0.26	+0.5
4,058,070	+		PFLU_RS17870	0.36	+0.4
4,058,070	+		PFLU_RS17870	0.36	+0.0
4,058,070	+		PFLU_RS17870	0.36	-0.4
4,058,070	+		PFLU_RS17870	0.36	+0.4
4,058,070	+		PFLU_RS17870	0.36	+0.3
4,058,070	+		PFLU_RS17870	0.36	-0.8
4,058,070	+		PFLU_RS17870	0.36	+0.2
4,058,070	+		PFLU_RS17870	0.36	+0.3
4,058,070	+		PFLU_RS17870	0.36	+0.3
4,058,071	-		PFLU_RS17870	0.36	+0.5
4,058,071	-		PFLU_RS17870	0.36	+1.3
4,058,071	-		PFLU_RS17870	0.36	+0.2
4,058,071	-		PFLU_RS17870	0.36	-0.4
4,058,229	+		PFLU_RS17870	0.47	+0.9