Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17725

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,023,845	+				+1.0
4,023,845	+				+0.7
4,023,845	+				-0.2
4,023,845	+				+0.6
4,023,845	+				-0.6
4,023,846	-				-0.1
4,023,846	-				+0.0
4,023,846	-				+0.3
4,023,846	-				+0.1
4,023,846	-				+0.1
4,023,846	-				+0.0
4,023,846	-				-0.5
4,023,846	-				-0.3
4,023,846	-				+1.1
4,023,906	+				+1.1
4,023,906	+				-1.8
4,023,906	+				+0.6
4,023,906	+				-1.6
4,023,906	+				-0.9
4,023,906	+				+0.8
4,023,906	+				+1.2
4,023,907	-				+0.2
4,023,907	-				-1.6
4,023,907	-				-0.5
4,023,907	-				+1.2
4,023,907	-				+1.1
4,023,907	-				+0.7
4,023,949	+				+4.2
4,023,949	+				+1.0
4,024,052	+				+0.2
4,024,092	+		PFLU_RS17720	0.12	+0.4
4,024,092	+		PFLU_RS17720	0.12	+0.2
4,024,092	+		PFLU_RS17720	0.12	+0.2
4,024,092	+		PFLU_RS17720	0.12	+0.1
4,024,092	+		PFLU_RS17720	0.12	+0.3
4,024,092	+		PFLU_RS17720	0.12	+1.0
4,024,092	+		PFLU_RS17720	0.12	-0.2
4,024,092	+		PFLU_RS17720	0.12	+2.4
4,024,092	+		PFLU_RS17720	0.12	+0.2
4,024,092	+		PFLU_RS17720	0.12	-0.8
4,024,092	+		PFLU_RS17720	0.12	+0.3
4,024,092	+		PFLU_RS17720	0.12	-0.4
4,024,093	-		PFLU_RS17720	0.12	+0.1
4,024,093	-		PFLU_RS17720	0.12	+1.1
4,024,093	-		PFLU_RS17720	0.12	-0.2
4,024,093	-		PFLU_RS17720	0.12	+1.2
4,024,093	-		PFLU_RS17720	0.12	-1.2
4,024,093	-		PFLU_RS17720	0.12	+0.3
4,024,093	-		PFLU_RS17720	0.12	-1.1
4,024,093	-		PFLU_RS17720	0.12	-0.5
4,024,093	-		PFLU_RS17720	0.12	-0.3
4,024,094	+		PFLU_RS17720	0.12	+0.1
4,024,149	+		PFLU_RS17720	0.18	+0.2
4,024,149	+		PFLU_RS17720	0.18	+0.9
4,024,149	+		PFLU_RS17720	0.18	-0.4
4,024,149	+		PFLU_RS17720	0.18	+0.2
4,024,149	+		PFLU_RS17720	0.18	-1.4
4,024,149	+		PFLU_RS17720	0.18	-0.8
4,024,149	+		PFLU_RS17720	0.18	-0.6
4,024,150	-		PFLU_RS17720	0.19	+0.1
4,024,150	-		PFLU_RS17720	0.19	-1.1
4,024,150	-		PFLU_RS17720	0.19	-0.1
4,024,150	-		PFLU_RS17720	0.19	-0.7
4,024,150	-		PFLU_RS17720	0.19	+1.8
4,024,150	-		PFLU_RS17720	0.19	+0.2
4,024,150	-		PFLU_RS17720	0.19	+0.9
4,024,150	-		PFLU_RS17720	0.19	+0.3
4,024,150	-		PFLU_RS17720	0.19	-1.3
4,024,150	-		PFLU_RS17720	0.19	-0.9
4,024,153	-		PFLU_RS17720	0.19	-0.7
4,024,153	-		PFLU_RS17720	0.19	-1.7
4,024,153	-		PFLU_RS17720	0.19	-0.7
4,024,153	-		PFLU_RS17720	0.19	+1.3
4,024,153	-		PFLU_RS17720	0.19	-0.7
4,024,158	+		PFLU_RS17720	0.19	-0.0
4,024,158	+		PFLU_RS17720	0.19	+1.2
4,024,158	+		PFLU_RS17720	0.19	+0.1
4,024,258	-		PFLU_RS17720	0.31	+0.6
4,024,270	-		PFLU_RS17720	0.32	-2.5
4,024,297	+		PFLU_RS17720	0.35	+1.6
4,024,297	+		PFLU_RS17720	0.35	-2.5
4,024,297	+		PFLU_RS17720	0.35	+0.2
4,024,297	+		PFLU_RS17720	0.35	-0.5
4,024,297	+		PFLU_RS17720	0.35	-0.4
4,024,298	-		PFLU_RS17720	0.35	-3.1
4,024,375	-		PFLU_RS17720	0.44	+0.9
4,024,375	-		PFLU_RS17720	0.44	+1.3
4,024,375	-		PFLU_RS17720	0.44	+0.5
4,024,395	+		PFLU_RS17720	0.46	+0.3
4,024,396	-		PFLU_RS17720	0.46	+1.8
4,024,455	+		PFLU_RS17720	0.53	+0.6
4,024,455	+		PFLU_RS17720	0.53	+0.5
4,024,455	+		PFLU_RS17720	0.53	+0.2
4,024,456	-		PFLU_RS17720	0.53	+1.0
4,024,456	-		PFLU_RS17720	0.53	-0.9
4,024,468	+		PFLU_RS17720	0.54	+0.0
4,024,468	+		PFLU_RS17720	0.54	+0.8
4,024,469	-		PFLU_RS17720	0.54	+0.3
4,024,469	-		PFLU_RS17720	0.54	+0.9
4,024,469	-		PFLU_RS17720	0.54	+1.4
4,024,517	+		PFLU_RS17720	0.60	-0.8
4,024,517	+		PFLU_RS17720	0.60	-0.1
4,024,517	+		PFLU_RS17720	0.60	-0.2
4,024,517	+		PFLU_RS17720	0.60	+1.4
4,024,518	-		PFLU_RS17720	0.60	+0.7
4,024,518	-		PFLU_RS17720	0.60	-2.5
4,024,539	+		PFLU_RS17720	0.62	+0.0
4,024,539	+		PFLU_RS17720	0.62	-0.2
4,024,540	-		PFLU_RS17720	0.62	+1.0
4,024,540	-		PFLU_RS17720	0.62	-0.4
4,024,540	-		PFLU_RS17720	0.62	-0.7
4,024,540	-		PFLU_RS17720	0.62	+0.2
4,024,540	-		PFLU_RS17720	0.62	-3.6
4,024,611	+		PFLU_RS17720	0.70	+1.2
4,024,612	-		PFLU_RS17720	0.70	+0.1
4,024,636	-		PFLU_RS17720	0.73	-0.1
4,024,636	-		PFLU_RS17720	0.73	-1.7
4,024,638	+		PFLU_RS17720	0.73	-0.3
4,024,831	+				-1.5
4,024,831	+				+0.6
4,024,831	+				+0.5
4,024,831	+				-0.2
4,024,832	-				+1.4
4,024,832	-				+0.4
4,024,832	-				-1.6
4,024,835	+				+1.6
4,024,836	-				+0.6
4,024,836	-				-2.8
4,024,836	-				-0.5
4,024,908	-		PFLU_RS17725	0.15	+0.3
4,024,931	+		PFLU_RS17725	0.19	-2.7
4,024,955	+		PFLU_RS17725	0.23	-0.2
4,024,956	-		PFLU_RS17725	0.23	+0.2
4,024,970	+		PFLU_RS17725	0.26	-0.0
4,024,970	+		PFLU_RS17725	0.26	+0.4
4,024,970	+		PFLU_RS17725	0.26	-2.7
4,024,970	+		PFLU_RS17725	0.26	-0.4
4,024,971	-		PFLU_RS17725	0.26	+0.7
4,024,971	-		PFLU_RS17725	0.26	+1.4
4,024,971	-		PFLU_RS17725	0.26	+0.2
4,025,084	+		PFLU_RS17725	0.45	+0.4
4,025,159	+		PFLU_RS17725	0.58	-2.2
4,025,159	+		PFLU_RS17725	0.58	-0.9
4,025,159	+		PFLU_RS17725	0.58	-0.4
4,025,159	+		PFLU_RS17725	0.58	+0.8
4,025,159	+		PFLU_RS17725	0.58	-0.4
4,025,159	+		PFLU_RS17725	0.58	+0.0
4,025,160	-		PFLU_RS17725	0.58	-0.5
4,025,160	-		PFLU_RS17725	0.58	+0.4
4,025,160	-		PFLU_RS17725	0.58	+0.4
4,025,160	-		PFLU_RS17725	0.58	+1.4
4,025,160	-		PFLU_RS17725	0.58	-0.4
4,025,160	-		PFLU_RS17725	0.58	-0.2
4,025,160	-		PFLU_RS17725	0.58	+1.2
4,025,160	-		PFLU_RS17725	0.58	+0.7
4,025,160	-		PFLU_RS17725	0.58	+0.8
4,025,449	+				+0.3
4,025,497	+				-0.5
4,025,518	+				+0.3
4,025,519	-				-1.5
4,025,520	+				+0.5
4,025,520	+				+0.3
4,025,521	-				+0.8
4,025,521	-				-0.6
4,025,556	+				+0.8
4,025,571	-				-0.2
4,025,574	+				+0.4
4,025,575	-				-0.2
4,025,594	+				+1.7
4,025,594	+				+1.1
4,025,594	+				-0.7
4,025,594	+				+0.9
4,025,595	-				-1.0
4,025,595	-				+0.4
4,025,595	-				+0.1
4,025,595	-				-0.6
4,025,595	-				+0.9
4,025,595	-				+1.3
4,025,621	+				+0.9
4,025,622	-				+0.7
4,025,622	-				+0.4
4,025,784	-		PFLU_RS17730	0.16	-1.6
4,025,793	+		PFLU_RS17730	0.17	+0.4
4,025,793	+		PFLU_RS17730	0.17	+0.5
4,025,794	-		PFLU_RS17730	0.18	-2.8
4,025,794	-		PFLU_RS17730	0.18	-0.7
4,025,794	-		PFLU_RS17730	0.18	-0.8
4,025,796	+		PFLU_RS17730	0.18	+0.3
4,025,796	+		PFLU_RS17730	0.18	-0.5
4,025,797	-		PFLU_RS17730	0.18	+0.1
4,025,797	-		PFLU_RS17730	0.18	+1.3
4,025,797	-		PFLU_RS17730	0.18	+0.8
4,025,797	-		PFLU_RS17730	0.18	+0.3
4,026,226	-		PFLU_RS17730	0.69	-0.1
4,026,254	+		PFLU_RS17730	0.72	-0.1
4,026,254	+		PFLU_RS17730	0.72	+0.0
4,026,254	+		PFLU_RS17730	0.72	+0.1
4,026,254	+		PFLU_RS17730	0.72	-0.9
4,026,254	+		PFLU_RS17730	0.72	+1.4
4,026,254	+		PFLU_RS17730	0.72	-0.2
4,026,254	+		PFLU_RS17730	0.72	+0.6
4,026,255	-		PFLU_RS17730	0.72	-0.1
4,026,255	-		PFLU_RS17730	0.72	-0.9
4,026,255	-		PFLU_RS17730	0.72	+0.3
4,026,255	-		PFLU_RS17730	0.72	-0.0
4,026,255	-		PFLU_RS17730	0.72	+3.2
4,026,255	-		PFLU_RS17730	0.72	+1.4
4,026,255	-		PFLU_RS17730	0.72	+1.4
4,026,255	-		PFLU_RS17730	0.72	+1.2
4,026,255	-		PFLU_RS17730	0.72	+0.6
4,026,255	-		PFLU_RS17730	0.72	+1.1
4,026,255	-		PFLU_RS17730	0.72	-0.3
4,026,312	-		PFLU_RS17730	0.79	+0.4
4,026,366	+		PFLU_RS17730	0.85	-0.5
4,026,366	+		PFLU_RS17730	0.85	-0.2
4,026,366	+		PFLU_RS17730	0.85	+0.5
4,026,366	+		PFLU_RS17730	0.85	+0.7
4,026,367	-		PFLU_RS17730	0.86	+0.3
4,026,367	-		PFLU_RS17730	0.86	+0.5