Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14930

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,339,500	-		PFLU_RS14925	0.36	+1.1
3,339,530	-		PFLU_RS14925	0.38	-0.6
3,339,535	-		PFLU_RS14925	0.39	-0.0
3,339,535	-		PFLU_RS14925	0.39	+2.0
3,339,535	-		PFLU_RS14925	0.39	+0.3
3,339,601	+		PFLU_RS14925	0.44	-0.8
3,339,629	-		PFLU_RS14925	0.46	+0.0
3,339,658	+		PFLU_RS14925	0.48	-0.7
3,339,674	-		PFLU_RS14925	0.50	-1.1
3,339,674	-		PFLU_RS14925	0.50	-0.7
3,339,674	-		PFLU_RS14925	0.50	-1.1
3,339,692	+		PFLU_RS14925	0.51	-0.5
3,339,801	-		PFLU_RS14925	0.60	-0.4
3,339,803	+		PFLU_RS14925	0.60	+0.3
3,339,804	-		PFLU_RS14925	0.60	+0.3
3,339,804	-		PFLU_RS14925	0.60	+0.8
3,339,820	+		PFLU_RS14925	0.61	+1.6
3,339,821	-		PFLU_RS14925	0.61	+0.8
3,339,851	-		PFLU_RS14925	0.64	-1.1
3,339,851	-		PFLU_RS14925	0.64	-2.1
3,339,887	-		PFLU_RS14925	0.67	+1.1
3,339,887	-		PFLU_RS14925	0.67	+2.6
3,339,932	+		PFLU_RS14925	0.70	+0.8
3,339,933	-		PFLU_RS14925	0.70	+0.8
3,339,933	-		PFLU_RS14925	0.70	+1.0
3,339,933	-		PFLU_RS14925	0.70	+0.5
3,339,978	+		PFLU_RS14925	0.74	-0.2
3,340,183	+				-0.7
3,340,183	+				+1.0
3,340,326	+				+0.3
3,340,411	+				+0.8
3,340,433	+				+1.6
3,340,433	+				+0.5
3,340,433	+				+0.2
3,340,434	-				+1.4
3,340,434	-				-0.6
3,340,435	+				-0.6
3,340,436	-				+0.5
3,340,636	+		PFLU_RS14930	0.18	-0.2
3,340,640	+		PFLU_RS14930	0.19	+0.1
3,340,640	+		PFLU_RS14930	0.19	+0.6
3,340,640	+		PFLU_RS14930	0.19	-1.0
3,340,640	+		PFLU_RS14930	0.19	+0.6
3,340,640	+		PFLU_RS14930	0.19	-0.4
3,340,640	+		PFLU_RS14930	0.19	+0.2
3,340,640	+		PFLU_RS14930	0.19	-0.0
3,340,641	-		PFLU_RS14930	0.19	-0.3
3,340,641	-		PFLU_RS14930	0.19	+0.2
3,340,641	-		PFLU_RS14930	0.19	+0.6
3,340,641	-		PFLU_RS14930	0.19	+0.5
3,340,641	-		PFLU_RS14930	0.19	-1.1
3,340,641	-		PFLU_RS14930	0.19	-2.1
3,340,641	-		PFLU_RS14930	0.19	+1.0
3,340,641	-		PFLU_RS14930	0.19	+1.0
3,340,641	-		PFLU_RS14930	0.19	-0.8
3,340,653	+		PFLU_RS14930	0.20	+0.0
3,340,653	+		PFLU_RS14930	0.20	+0.4
3,340,653	+		PFLU_RS14930	0.20	-0.3
3,340,656	+		PFLU_RS14930	0.20	+1.8
3,340,656	+		PFLU_RS14930	0.20	+0.2
3,340,656	+		PFLU_RS14930	0.20	+1.0
3,340,656	+		PFLU_RS14930	0.20	-1.1
3,340,657	-		PFLU_RS14930	0.20	+0.0
3,340,657	-		PFLU_RS14930	0.20	+0.3
3,340,657	-		PFLU_RS14930	0.20	+0.7
3,340,657	-		PFLU_RS14930	0.20	+0.6
3,340,707	-		PFLU_RS14930	0.24	-0.9
3,340,707	-		PFLU_RS14930	0.24	-0.2
3,340,710	-		PFLU_RS14930	0.24	+0.0
3,340,710	-		PFLU_RS14930	0.24	-0.6
3,340,710	-		PFLU_RS14930	0.24	+0.2
3,340,893	+		PFLU_RS14930	0.38	-0.7
3,340,893	+		PFLU_RS14930	0.38	-1.0
3,340,894	-		PFLU_RS14930	0.38	+0.9
3,341,001	+		PFLU_RS14930	0.46	+0.1
3,341,001	+		PFLU_RS14930	0.46	+0.2
3,341,012	-		PFLU_RS14930	0.47	-1.3
3,341,052	+		PFLU_RS14930	0.50	+0.3
3,341,052	+		PFLU_RS14930	0.50	+1.3
3,341,052	+		PFLU_RS14930	0.50	-0.4
3,341,053	-		PFLU_RS14930	0.50	+1.4
3,341,053	-		PFLU_RS14930	0.50	-1.6
3,341,181	+		PFLU_RS14930	0.60	+0.5
3,341,182	-		PFLU_RS14930	0.60	+0.8
3,341,182	-		PFLU_RS14930	0.60	-0.1
3,341,257	+		PFLU_RS14930	0.66	+0.4
3,341,258	-		PFLU_RS14930	0.66	-1.1
3,341,316	+		PFLU_RS14930	0.70	-1.3
3,341,316	+		PFLU_RS14930	0.70	-0.9
3,341,317	-		PFLU_RS14930	0.70	-0.1
3,341,317	-		PFLU_RS14930	0.70	-0.9
3,341,349	+		PFLU_RS14930	0.73	+2.0
3,341,349	+		PFLU_RS14930	0.73	+1.6
3,341,349	+		PFLU_RS14930	0.73	-0.6
3,341,349	+		PFLU_RS14930	0.73	-0.1
3,341,349	+		PFLU_RS14930	0.73	-0.2
3,341,349	+		PFLU_RS14930	0.73	-0.4
3,341,349	+		PFLU_RS14930	0.73	-0.6
3,341,349	+		PFLU_RS14930	0.73	+0.4
3,341,349	+		PFLU_RS14930	0.73	-0.1
3,341,350	-		PFLU_RS14930	0.73	-1.0
3,341,350	-		PFLU_RS14930	0.73	-1.6
3,341,350	-		PFLU_RS14930	0.73	-1.0
3,341,441	-		PFLU_RS14930	0.80	-0.8
3,341,441	-		PFLU_RS14930	0.80	+1.0
3,341,651	+				+1.2
3,341,651	+				+0.0
3,341,658	+				+0.7
3,341,659	-				+0.5
3,341,659	-				-0.4
3,341,659	-				+0.8
3,341,701	+				-0.5
3,341,701	+				+0.2
3,341,701	+				-0.3
3,341,701	+				-1.4
3,341,702	-				-0.8
3,341,702	-				+0.4
3,341,702	-				-1.2
3,341,702	-				-1.0
3,341,702	-				+0.0
3,341,702	-				+0.3
3,341,702	-				+0.1
3,341,702	-				-1.1
3,341,702	-				+0.4
3,341,702	-				+0.7
3,341,702	-				+0.1
3,341,721	+				+0.3
3,341,722	-				+1.0
3,341,727	+				-0.6
3,341,830	-				-2.1
3,342,231	+		PFLU_RS14935	0.30	+0.2
3,342,231	+		PFLU_RS14935	0.30	-0.4
3,342,231	+		PFLU_RS14935	0.30	-0.9
3,342,276	-		PFLU_RS14935	0.34	-0.1
3,342,474	+		PFLU_RS14935	0.48	-0.9
3,342,474	+		PFLU_RS14935	0.48	-1.8
3,342,474	+		PFLU_RS14935	0.48	+0.1
3,342,474	+		PFLU_RS14935	0.48	-0.2
3,342,474	+		PFLU_RS14935	0.48	+0.1
3,342,475	-		PFLU_RS14935	0.49	+0.0
3,342,475	-		PFLU_RS14935	0.49	-0.6
3,342,475	-		PFLU_RS14935	0.49	-0.2
3,342,475	-		PFLU_RS14935	0.49	-1.4
3,342,475	-		PFLU_RS14935	0.49	-1.5
3,342,475	-		PFLU_RS14935	0.49	-0.5
3,342,514	+		PFLU_RS14935	0.52	-0.7
3,342,514	+		PFLU_RS14935	0.52	+1.2
3,342,515	-		PFLU_RS14935	0.52	-0.1
3,342,517	+		PFLU_RS14935	0.52	-0.3
3,342,518	-		PFLU_RS14935	0.52	-0.6
3,342,523	-		PFLU_RS14935	0.52	+1.6
3,342,582	+		PFLU_RS14935	0.57	+0.8
3,342,582	+		PFLU_RS14935	0.57	+0.1
3,342,623	+		PFLU_RS14935	0.60	-0.1
3,342,624	-		PFLU_RS14935	0.60	+1.0
3,342,624	-		PFLU_RS14935	0.60	+1.2
3,342,640	+		PFLU_RS14935	0.61	+0.0