Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13555

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,068,331	-				-0.4
3,068,331	-				-1.1
3,068,331	-				+0.1
3,068,331	-				-1.6
3,068,332	+				-0.6
3,068,332	+				-0.2
3,068,332	+				+1.1
3,068,333	-				+1.0
3,068,333	-				-1.4
3,068,381	+				+0.9
3,068,381	+				+0.1
3,068,720	+		PFLU_RS13550	0.43	+0.8
3,068,888	+		PFLU_RS13550	0.63	+2.3
3,068,889	-		PFLU_RS13550	0.64	+0.7
3,068,889	-		PFLU_RS13550	0.64	+0.1
3,068,889	-		PFLU_RS13550	0.64	-0.5
3,068,890	+		PFLU_RS13550	0.64	-0.1
3,068,949	-		PFLU_RS13550	0.71	-0.2
3,069,050	+		PFLU_RS13550	0.83	+0.4
3,069,050	+		PFLU_RS13550	0.83	-0.2
3,069,050	+		PFLU_RS13550	0.83	+0.3
3,069,050	+		PFLU_RS13550	0.83	+0.5
3,069,050	+		PFLU_RS13550	0.83	+1.7
3,069,050	+		PFLU_RS13550	0.83	+0.7
3,069,050	+		PFLU_RS13550	0.83	+0.6
3,069,050	+		PFLU_RS13550	0.83	+0.5
3,069,050	+		PFLU_RS13550	0.83	-0.2
3,069,050	+		PFLU_RS13550	0.83	-1.0
3,069,050	+		PFLU_RS13550	0.83	+0.3
3,069,050	+		PFLU_RS13550	0.83	-2.1
3,069,051	-		PFLU_RS13550	0.84	-0.4
3,069,051	-		PFLU_RS13550	0.84	-0.4
3,069,051	-		PFLU_RS13550	0.84	+1.0
3,069,051	-		PFLU_RS13550	0.84	-0.5
3,069,051	-		PFLU_RS13550	0.84	+0.0
3,069,051	-		PFLU_RS13550	0.84	-1.5
3,069,064	+		PFLU_RS13550	0.85	-1.0
3,069,064	+		PFLU_RS13550	0.85	+0.5
3,069,065	-		PFLU_RS13550	0.85	+0.2
3,069,065	-		PFLU_RS13550	0.85	-0.0
3,069,086	+		PFLU_RS13550	0.88	+0.1
3,069,086	+		PFLU_RS13550	0.88	-0.2
3,069,087	-		PFLU_RS13550	0.88	+0.4
3,069,109	+				+1.0
3,069,109	+				+0.2
3,069,110	-				-2.1
3,069,151	+				-0.0
3,069,151	+				-0.1
3,069,152	-				+0.1
3,069,152	-				+0.3
3,069,152	-				-0.7
3,069,157	+				+0.0
3,069,157	+				+0.5
3,069,379	+		PFLU_RS13555	0.23	-1.3
3,069,379	+		PFLU_RS13555	0.23	-0.2
3,069,379	+		PFLU_RS13555	0.23	-1.4
3,069,380	-		PFLU_RS13555	0.23	-0.3
3,069,380	-		PFLU_RS13555	0.23	-1.2
3,069,469	+		PFLU_RS13555	0.33	+0.7
3,069,470	-		PFLU_RS13555	0.34	-0.1
3,069,470	-		PFLU_RS13555	0.34	-0.6
3,069,470	-		PFLU_RS13555	0.34	-1.4
3,069,470	-		PFLU_RS13555	0.34	+0.2
3,069,470	-		PFLU_RS13555	0.34	-0.1
3,069,470	-		PFLU_RS13555	0.34	+1.5
3,069,501	+		PFLU_RS13555	0.37	-0.9
3,069,501	+		PFLU_RS13555	0.37	-0.8
3,069,501	+		PFLU_RS13555	0.37	+0.1
3,069,577	+		PFLU_RS13555	0.46	+0.1
3,069,577	+		PFLU_RS13555	0.46	-1.0
3,069,577	+		PFLU_RS13555	0.46	-0.1
3,069,577	+		PFLU_RS13555	0.46	+0.7
3,069,577	+		PFLU_RS13555	0.46	-1.5
3,069,577	+		PFLU_RS13555	0.46	-0.1
3,069,577	+		PFLU_RS13555	0.46	+0.5
3,069,577	+		PFLU_RS13555	0.46	+1.3
3,069,578	-		PFLU_RS13555	0.47	+0.6
3,069,578	-		PFLU_RS13555	0.47	+0.1
3,069,578	-		PFLU_RS13555	0.47	+0.0
3,069,694	+		PFLU_RS13555	0.60	+1.4
3,069,694	+		PFLU_RS13555	0.60	+1.1
3,069,694	+		PFLU_RS13555	0.60	+0.2
3,069,694	+		PFLU_RS13555	0.60	-1.0
3,069,694	+		PFLU_RS13555	0.60	+0.6
3,069,694	+		PFLU_RS13555	0.60	-1.3
3,069,694	+		PFLU_RS13555	0.60	+0.5
3,069,694	+		PFLU_RS13555	0.60	-0.5
3,069,694	+		PFLU_RS13555	0.60	-1.2
3,069,695	-		PFLU_RS13555	0.61	+0.2
3,069,695	-		PFLU_RS13555	0.61	-0.2
3,069,796	+		PFLU_RS13555	0.73	+0.5
3,069,796	+		PFLU_RS13555	0.73	-0.7
3,069,796	+		PFLU_RS13555	0.73	-1.4
3,069,796	+		PFLU_RS13555	0.73	-0.5
3,069,796	+		PFLU_RS13555	0.73	-1.0
3,069,796	+		PFLU_RS13555	0.73	+1.4
3,069,796	+		PFLU_RS13555	0.73	-0.6
3,069,796	+		PFLU_RS13555	0.73	-0.3
3,069,796	+		PFLU_RS13555	0.73	-0.9
3,069,796	+		PFLU_RS13555	0.73	+0.4
3,069,796	+		PFLU_RS13555	0.73	+0.8
3,069,797	-		PFLU_RS13555	0.73	-0.1
3,069,797	-		PFLU_RS13555	0.73	+0.8
3,069,797	-		PFLU_RS13555	0.73	+0.5
3,069,797	-		PFLU_RS13555	0.73	+0.4
3,069,797	-		PFLU_RS13555	0.73	-0.9
3,069,797	-		PFLU_RS13555	0.73	+1.2
3,069,797	-		PFLU_RS13555	0.73	-0.4
3,069,856	+		PFLU_RS13555	0.80	+0.8
3,069,856	+		PFLU_RS13555	0.80	+0.9
3,069,976	+				-0.2
3,069,977	-				+1.1
3,069,977	-				+2.1
3,070,021	+				+0.1
3,070,176	+		PFLU_RS13560	0.24	-1.9
3,070,176	+		PFLU_RS13560	0.24	-0.1
3,070,316	+		PFLU_RS13560	0.42	-1.1
3,070,316	+		PFLU_RS13560	0.42	-0.9
3,070,316	+		PFLU_RS13560	0.42	-0.3
3,070,316	+		PFLU_RS13560	0.42	-0.7
3,070,316	+		PFLU_RS13560	0.42	-0.4
3,070,317	-		PFLU_RS13560	0.42	-0.5
3,070,317	-		PFLU_RS13560	0.42	-0.1
3,070,317	-		PFLU_RS13560	0.42	-1.2
3,070,317	-		PFLU_RS13560	0.42	-0.9
3,070,317	-		PFLU_RS13560	0.42	-0.8
3,070,317	-		PFLU_RS13560	0.42	+1.1
3,070,412	+		PFLU_RS13560	0.54	+0.9
3,070,413	-		PFLU_RS13560	0.54	+1.0
3,070,413	-		PFLU_RS13560	0.54	+1.2
3,070,472	+		PFLU_RS13560	0.62	+0.3
3,070,473	-		PFLU_RS13560	0.62	+1.3
3,070,563	-		PFLU_RS13560	0.73	+1.0
3,070,750	+				+0.3
3,070,750	+				+2.1
3,070,750	+				+0.4
3,070,750	+				-0.5
3,070,751	-				-1.2
3,070,751	-				+2.4
3,070,751	-				-0.3
3,070,751	-				-0.4
3,070,781	+				+0.4
3,070,781	+				-1.1
3,070,781	+				-0.8
3,070,782	-				+0.8
3,070,782	-				+1.1
3,070,782	-				-1.7
3,070,784	+				+0.0
3,070,785	-				-0.2
3,070,785	-				+0.0
3,070,819	-				-0.1
3,070,895	-				-0.7
3,070,903	+				+0.7
3,070,903	+				-2.2
3,070,903	+				-0.7
3,070,903	+				-0.2
3,070,904	-				-1.3
3,070,904	-				-1.2
3,070,904	-				+1.1
3,070,904	-				-3.1
3,070,936	+				-1.5
3,070,936	+				+1.0
3,070,936	+				-1.0
3,070,936	+				-0.1
3,070,936	+				+0.2
3,070,995	+				-0.3