Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13520

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,063,066	+		PFLU_RS13510	0.81	-2.7
3,063,067	-		PFLU_RS13510	0.81	+1.7
3,063,220	+				+1.5
3,063,220	+				+0.9
3,063,221	-				+0.4
3,063,221	-				+0.6
3,063,221	-				-0.1
3,063,221	-				-1.8
3,063,221	-				+0.9
3,063,221	-				-2.0
3,063,302	+				+0.1
3,063,303	-				-1.0
3,063,303	-				+0.7
3,063,303	-				-0.9
3,063,375	-		PFLU_RS13515	0.17	-2.1
3,063,384	+		PFLU_RS13515	0.18	+0.3
3,063,384	+		PFLU_RS13515	0.18	+0.6
3,063,384	+		PFLU_RS13515	0.18	-0.2
3,063,384	+		PFLU_RS13515	0.18	+1.2
3,063,384	+		PFLU_RS13515	0.18	-2.5
3,063,384	+		PFLU_RS13515	0.18	-0.1
3,063,385	-		PFLU_RS13515	0.18	-0.2
3,063,385	-		PFLU_RS13515	0.18	+0.7
3,063,385	-		PFLU_RS13515	0.18	+0.3
3,063,385	-		PFLU_RS13515	0.18	-1.2
3,063,385	-		PFLU_RS13515	0.18	+1.1
3,063,393	+		PFLU_RS13515	0.19	+0.8
3,063,393	+		PFLU_RS13515	0.19	+0.7
3,063,393	+		PFLU_RS13515	0.19	-0.0
3,063,393	+		PFLU_RS13515	0.19	-0.1
3,063,394	-		PFLU_RS13515	0.19	-2.4
3,063,394	-		PFLU_RS13515	0.19	+0.8
3,063,394	-		PFLU_RS13515	0.19	-0.8
3,063,394	-		PFLU_RS13515	0.19	-0.9
3,063,394	-		PFLU_RS13515	0.19	+0.1
3,063,394	-		PFLU_RS13515	0.19	-0.2
3,063,394	-		PFLU_RS13515	0.19	+0.1
3,063,394	-		PFLU_RS13515	0.19	+0.8
3,063,394	-		PFLU_RS13515	0.19	-0.4
3,063,394	-		PFLU_RS13515	0.19	-0.4
3,063,426	+		PFLU_RS13515	0.24	-0.6
3,063,426	+		PFLU_RS13515	0.24	+0.9
3,063,427	-		PFLU_RS13515	0.24	-1.1
3,063,427	-		PFLU_RS13515	0.24	-0.2
3,063,427	-		PFLU_RS13515	0.24	+0.0
3,063,427	-		PFLU_RS13515	0.24	-0.9
3,063,522	+		PFLU_RS13515	0.38	+0.0
3,063,522	+		PFLU_RS13515	0.38	+1.5
3,063,522	+		PFLU_RS13515	0.38	+0.3
3,063,523	-		PFLU_RS13515	0.38	+0.8
3,063,523	-		PFLU_RS13515	0.38	-1.2
3,063,664	+		PFLU_RS13515	0.58	+0.1
3,063,665	-		PFLU_RS13515	0.59	-0.7
3,063,747	+		PFLU_RS13515	0.70	-0.5
3,063,792	+		PFLU_RS13515	0.77	+1.0
3,063,792	+		PFLU_RS13515	0.77	-0.6
3,063,792	+		PFLU_RS13515	0.77	+0.1
3,063,792	+		PFLU_RS13515	0.77	+0.3
3,063,792	+		PFLU_RS13515	0.77	-1.8
3,063,792	+		PFLU_RS13515	0.77	-1.7
3,063,792	+		PFLU_RS13515	0.77	+1.8
3,063,793	-		PFLU_RS13515	0.77	+0.6
3,063,793	-		PFLU_RS13515	0.77	-0.6
3,063,793	-		PFLU_RS13515	0.77	-0.5
3,063,793	-		PFLU_RS13515	0.77	-0.4
3,063,793	-		PFLU_RS13515	0.77	+0.0
3,063,793	-		PFLU_RS13515	0.77	+1.5
3,063,793	-		PFLU_RS13515	0.77	-1.1
3,063,794	+		PFLU_RS13515	0.77	-3.5
3,063,794	+		PFLU_RS13515	0.77	-1.5
3,063,794	+		PFLU_RS13515	0.77	+1.0
3,063,795	-		PFLU_RS13515	0.77	-0.1
3,063,795	-		PFLU_RS13515	0.77	+0.8
3,063,821	+		PFLU_RS13515	0.81	+0.6
3,063,821	+		PFLU_RS13515	0.81	-0.5
3,063,821	+		PFLU_RS13515	0.81	-0.2
3,063,821	+		PFLU_RS13515	0.81	-0.6
3,063,821	+		PFLU_RS13515	0.81	-2.2
3,063,821	+		PFLU_RS13515	0.81	-0.8
3,063,821	+		PFLU_RS13515	0.81	-1.1
3,063,821	+		PFLU_RS13515	0.81	-0.8
3,063,821	+		PFLU_RS13515	0.81	-0.4
3,063,821	+		PFLU_RS13515	0.81	+1.7
3,063,821	+		PFLU_RS13515	0.81	-1.0
3,063,822	-		PFLU_RS13515	0.81	-1.1
3,063,822	-		PFLU_RS13515	0.81	+0.5
3,063,822	-		PFLU_RS13515	0.81	-0.9
3,063,825	+		PFLU_RS13515	0.82	+0.9
3,063,825	+		PFLU_RS13515	0.82	+0.4
3,063,825	+		PFLU_RS13515	0.82	+0.8
3,063,825	+		PFLU_RS13515	0.82	-0.5
3,063,825	+		PFLU_RS13515	0.82	-1.0
3,063,825	+		PFLU_RS13515	0.82	+1.3
3,063,825	+		PFLU_RS13515	0.82	-1.2
3,063,825	+		PFLU_RS13515	0.82	-1.2
3,063,825	+		PFLU_RS13515	0.82	-0.9
3,063,826	-		PFLU_RS13515	0.82	+1.1
3,063,826	-		PFLU_RS13515	0.82	+0.6
3,063,826	-		PFLU_RS13515	0.82	+1.1
3,063,826	-		PFLU_RS13515	0.82	+0.4
3,063,905	+				-0.2
3,063,905	+				+0.8
3,063,905	+				-0.5
3,063,905	+				+0.6
3,063,905	+				+0.4
3,063,905	+				-0.9
3,063,906	-				-0.1
3,063,906	-				+0.0
3,063,906	-				-1.1
3,063,906	-				+0.8
3,063,920	+				+1.4
3,063,920	+				-0.7
3,063,920	+				+0.4
3,063,920	+				+1.4
3,063,921	-				+1.4
3,063,921	-				+1.4
3,063,921	-				-0.9
3,063,921	-				-0.3
3,064,057	+		PFLU_RS13520	0.22	+0.8
3,064,058	-		PFLU_RS13520	0.23	-1.2
3,064,107	+		PFLU_RS13520	0.31	-1.5
3,064,108	-		PFLU_RS13520	0.31	-0.5
3,064,127	+		PFLU_RS13520	0.34	-0.2
3,064,165	+		PFLU_RS13520	0.40	+0.5
3,064,166	-		PFLU_RS13520	0.40	+0.2
3,064,220	+		PFLU_RS13520	0.49	+0.2
3,064,220	+		PFLU_RS13520	0.49	-0.6
3,064,220	+		PFLU_RS13520	0.49	-0.6
3,064,220	+		PFLU_RS13520	0.49	-0.2
3,064,221	-		PFLU_RS13520	0.50	+0.7
3,064,221	-		PFLU_RS13520	0.50	+0.4
3,064,273	+		PFLU_RS13520	0.58	-0.5
3,064,319	+		PFLU_RS13520	0.66	+0.1
3,064,319	+		PFLU_RS13520	0.66	-0.2
3,064,319	+		PFLU_RS13520	0.66	+0.5
3,064,319	+		PFLU_RS13520	0.66	+0.1
3,064,319	+		PFLU_RS13520	0.66	-0.2
3,064,319	+		PFLU_RS13520	0.66	+0.1
3,064,319	+		PFLU_RS13520	0.66	-1.2
3,064,320	-		PFLU_RS13520	0.66	-0.7
3,064,320	-		PFLU_RS13520	0.66	-0.5
3,064,320	-		PFLU_RS13520	0.66	-0.1
3,064,320	-		PFLU_RS13520	0.66	+0.0
3,064,459	+		PFLU_RS13520	0.89	+1.3
3,064,460	-		PFLU_RS13520	0.89	-0.1
3,064,460	-		PFLU_RS13520	0.89	+1.7
3,064,528	+				-2.4
3,064,528	+				-0.5
3,064,528	+				-1.0
3,064,528	+				-0.8
3,064,528	+				-0.2
3,064,530	+				-0.5
3,064,560	+				-0.2
3,064,560	+				-1.6
3,064,605	+				+1.1
3,064,605	+				-1.1
3,064,606	-				+0.4
3,064,606	-				-0.3
3,064,735	+		PFLU_RS13525	0.23	+2.5
3,064,849	+		PFLU_RS13525	0.42	+0.4
3,064,850	-		PFLU_RS13525	0.43	+0.8
3,064,895	+		PFLU_RS13525	0.50	-0.9
3,064,896	-		PFLU_RS13525	0.50	-0.2
3,064,921	+		PFLU_RS13525	0.55	-1.2
3,064,922	-		PFLU_RS13525	0.55	-0.1
3,065,021	-		PFLU_RS13525	0.71	-0.2
3,065,065	+		PFLU_RS13525	0.79	+0.9
3,065,065	+		PFLU_RS13525	0.79	+0.6
3,065,297	+				-0.2
3,065,297	+				+0.8
3,065,297	+				-2.1
3,065,298	-				+0.8
3,065,303	+				+0.6
3,065,304	-				-0.2
3,065,358	+		PFLU_RS13530	0.20	-0.6
3,065,358	+		PFLU_RS13530	0.20	-0.9
3,065,359	-		PFLU_RS13530	0.20	-0.9
3,065,498	-		PFLU_RS13530	0.73	-0.7
3,065,513	-		PFLU_RS13530	0.79	+1.7
3,065,513	-		PFLU_RS13530	0.79	-0.3
3,065,513	-		PFLU_RS13530	0.79	+0.9