Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08525

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08520 and PFLU_RS08525 are separated by 203 nucleotidesPFLU_RS08525 and PFLU_RS08530 overlap by 4 nucleotidesPFLU_RS08530 and PFLU_RS08535 overlap by 47 nucleotides PFLU_RS08520: PFLU_RS08520 - IS110 family transposase, at 1,899,550 to 1,900,482 _RS08520 PFLU_RS08525: PFLU_RS08525 - glutathione peroxidase, at 1,900,686 to 1,901,171 _RS08525 PFLU_RS08530: PFLU_RS08530 - MarR family transcriptional regulator, at 1,901,168 to 1,901,647 _RS08530 PFLU_RS08535: PFLU_RS08535 - response regulator, at 1,901,601 to 1,903,910 _RS08535 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -1 0 1 2 3at 1900.621 kb on + strandat 1900.648 kb on + strandat 1900.648 kb on + strandat 1900.649 kb on - strandat 1900.649 kb on - strandat 1900.649 kb on - strandat 1900.649 kb on - strandat 1900.812 kb on + strand, within PFLU_RS08525at 1900.812 kb on + strand, within PFLU_RS08525at 1900.812 kb on + strand, within PFLU_RS08525at 1900.812 kb on + strand, within PFLU_RS08525at 1900.812 kb on + strand, within PFLU_RS08525at 1900.813 kb on - strand, within PFLU_RS08525at 1900.813 kb on - strand, within PFLU_RS08525at 1900.813 kb on - strand, within PFLU_RS08525at 1900.842 kb on + strand, within PFLU_RS08525at 1900.842 kb on + strand, within PFLU_RS08525at 1900.842 kb on + strand, within PFLU_RS08525at 1900.842 kb on + strand, within PFLU_RS08525at 1900.843 kb on - strand, within PFLU_RS08525at 1900.843 kb on - strand, within PFLU_RS08525at 1900.843 kb on - strand, within PFLU_RS08525at 1900.843 kb on - strand, within PFLU_RS08525at 1901.213 kb on + strandat 1901.214 kb on - strandat 1901.214 kb on - strandat 1901.214 kb on - strandat 1901.243 kb on + strand, within PFLU_RS08530at 1901.243 kb on + strand, within PFLU_RS08530at 1901.243 kb on + strand, within PFLU_RS08530at 1901.243 kb on + strand, within PFLU_RS08530at 1901.243 kb on + strand, within PFLU_RS08530at 1901.244 kb on - strand, within PFLU_RS08530at 1901.244 kb on - strand, within PFLU_RS08530at 1901.245 kb on + strand, within PFLU_RS08530at 1901.246 kb on - strand, within PFLU_RS08530at 1901.246 kb on - strand, within PFLU_RS08530at 1901.246 kb on - strand, within PFLU_RS08530at 1901.246 kb on - strand, within PFLU_RS08530at 1901.276 kb on + strand, within PFLU_RS08530at 1901.285 kb on + strand, within PFLU_RS08530at 1901.285 kb on + strand, within PFLU_RS08530at 1901.286 kb on - strand, within PFLU_RS08530at 1901.677 kb on + strandat 1901.678 kb on - strandat 1901.797 kb on + strandat 1901.798 kb on - strandat 1901.816 kb on + strandat 1901.816 kb on + strandat 1901.817 kb on - strandat 1901.817 kb on - strandat 1901.817 kb on - strandat 1901.817 kb on - strandat 1901.817 kb on - strandat 1902.044 kb on + strand, within PFLU_RS08535at 1902.044 kb on + strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.045 kb on - strand, within PFLU_RS08535at 1902.061 kb on + strand, within PFLU_RS08535at 1902.062 kb on - strand, within PFLU_RS08535at 1902.145 kb on + strand, within PFLU_RS08535

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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1,900,621 + +0.3
1,900,648 + -0.8
1,900,648 + -0.0
1,900,649 - -0.3
1,900,649 - +1.2
1,900,649 - +1.0
1,900,649 - +0.6
1,900,812 + PFLU_RS08525 0.26 -0.2
1,900,812 + PFLU_RS08525 0.26 -0.2
1,900,812 + PFLU_RS08525 0.26 -0.7
1,900,812 + PFLU_RS08525 0.26 -0.2
1,900,812 + PFLU_RS08525 0.26 -1.2
1,900,813 - PFLU_RS08525 0.26 +0.8
1,900,813 - PFLU_RS08525 0.26 -0.4
1,900,813 - PFLU_RS08525 0.26 +0.5
1,900,842 + PFLU_RS08525 0.32 -0.4
1,900,842 + PFLU_RS08525 0.32 +1.2
1,900,842 + PFLU_RS08525 0.32 -0.2
1,900,842 + PFLU_RS08525 0.32 +0.0
1,900,843 - PFLU_RS08525 0.32 +0.5
1,900,843 - PFLU_RS08525 0.32 -1.0
1,900,843 - PFLU_RS08525 0.32 +0.9
1,900,843 - PFLU_RS08525 0.32 -0.7
1,901,213 + -0.0
1,901,214 - +1.0
1,901,214 - +0.8
1,901,214 - +0.5
1,901,243 + PFLU_RS08530 0.16 +0.1
1,901,243 + PFLU_RS08530 0.16 -0.8
1,901,243 + PFLU_RS08530 0.16 +0.6
1,901,243 + PFLU_RS08530 0.16 +3.1
1,901,243 + PFLU_RS08530 0.16 -0.7
1,901,244 - PFLU_RS08530 0.16 +1.1
1,901,244 - PFLU_RS08530 0.16 -0.4
1,901,245 + PFLU_RS08530 0.16 -0.2
1,901,246 - PFLU_RS08530 0.16 +1.1
1,901,246 - PFLU_RS08530 0.16 +0.8
1,901,246 - PFLU_RS08530 0.16 -0.7
1,901,246 - PFLU_RS08530 0.16 +0.4
1,901,276 + PFLU_RS08530 0.23 +0.6
1,901,285 + PFLU_RS08530 0.24 -0.1
1,901,285 + PFLU_RS08530 0.24 +0.2
1,901,286 - PFLU_RS08530 0.25 +0.1
1,901,677 + -0.1
1,901,678 - +0.8
1,901,797 + -0.5
1,901,798 - -0.1
1,901,816 + -0.3
1,901,816 + +0.4
1,901,817 - +1.3
1,901,817 - -0.7
1,901,817 - -0.4
1,901,817 - -0.4
1,901,817 - -0.2
1,902,044 + PFLU_RS08535 0.19 -0.7
1,902,044 + PFLU_RS08535 0.19 +0.2
1,902,045 - PFLU_RS08535 0.19 +0.2
1,902,045 - PFLU_RS08535 0.19 -0.9
1,902,045 - PFLU_RS08535 0.19 +1.8
1,902,045 - PFLU_RS08535 0.19 +1.0
1,902,045 - PFLU_RS08535 0.19 +1.3
1,902,045 - PFLU_RS08535 0.19 -0.2
1,902,045 - PFLU_RS08535 0.19 +0.8
1,902,045 - PFLU_RS08535 0.19 +0.2
1,902,045 - PFLU_RS08535 0.19 -0.6
1,902,061 + PFLU_RS08535 0.20 -1.0
1,902,062 - PFLU_RS08535 0.20 +0.4
1,902,145 + PFLU_RS08535 0.24 +1.0

Or see this region's nucleotide sequence