Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07265

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,619,064	+		PFLU_RS07260	0.23	+0.3
1,619,064	+		PFLU_RS07260	0.23	-0.9
1,619,075	+		PFLU_RS07260	0.24	+0.1
1,619,087	+		PFLU_RS07260	0.26	-0.0
1,619,305	+		PFLU_RS07260	0.46	+0.2
1,619,306	-		PFLU_RS07260	0.46	+0.3
1,619,306	-		PFLU_RS07260	0.46	+1.7
1,619,380	+		PFLU_RS07260	0.53	-0.2
1,619,380	+		PFLU_RS07260	0.53	+1.4
1,619,380	+		PFLU_RS07260	0.53	+0.9
1,619,380	+		PFLU_RS07260	0.53	+0.0
1,619,380	+		PFLU_RS07260	0.53	-0.3
1,619,381	-		PFLU_RS07260	0.53	+1.6
1,619,446	+		PFLU_RS07260	0.59	+0.2
1,619,446	+		PFLU_RS07260	0.59	-0.5
1,619,446	+		PFLU_RS07260	0.59	+0.3
1,619,446	+		PFLU_RS07260	0.59	+0.5
1,619,446	+		PFLU_RS07260	0.59	+0.0
1,619,446	+		PFLU_RS07260	0.59	-1.0
1,619,446	+		PFLU_RS07260	0.59	-0.3
1,619,446	+		PFLU_RS07260	0.59	+0.0
1,619,446	+		PFLU_RS07260	0.59	-0.5
1,619,446	+		PFLU_RS07260	0.59	-1.0
1,619,446	+		PFLU_RS07260	0.59	-1.1
1,619,447	-		PFLU_RS07260	0.59	+0.3
1,619,447	-		PFLU_RS07260	0.59	+0.4
1,619,447	-		PFLU_RS07260	0.59	+1.0
1,619,447	-		PFLU_RS07260	0.59	+0.7
1,619,447	-		PFLU_RS07260	0.59	+0.3
1,619,447	-		PFLU_RS07260	0.59	+1.8
1,619,447	-		PFLU_RS07260	0.59	+0.6
1,619,447	-		PFLU_RS07260	0.59	+1.1
1,619,447	-		PFLU_RS07260	0.59	+0.5
1,619,447	-		PFLU_RS07260	0.59	-0.3
1,619,447	-		PFLU_RS07260	0.59	+0.1
1,619,447	-		PFLU_RS07260	0.59	+0.6
1,619,447	-		PFLU_RS07260	0.59	+0.3
1,619,447	-		PFLU_RS07260	0.59	-0.4
1,619,447	-		PFLU_RS07260	0.59	+0.3
1,619,447	-		PFLU_RS07260	0.59	-0.1
1,619,447	-		PFLU_RS07260	0.59	+0.2
1,619,447	-		PFLU_RS07260	0.59	-2.5
1,619,447	-		PFLU_RS07260	0.59	-0.8
1,619,447	-		PFLU_RS07260	0.59	-0.0
1,619,494	+		PFLU_RS07260	0.64	-0.4
1,619,494	+		PFLU_RS07260	0.64	-1.5
1,619,494	+		PFLU_RS07260	0.64	+1.0
1,619,494	+		PFLU_RS07260	0.64	+0.7
1,619,494	+		PFLU_RS07260	0.64	+0.7
1,619,494	+		PFLU_RS07260	0.64	+1.5
1,619,494	+		PFLU_RS07260	0.64	-0.1
1,619,494	+		PFLU_RS07260	0.64	-0.3
1,619,494	+		PFLU_RS07260	0.64	+0.4
1,619,494	+		PFLU_RS07260	0.64	-0.2
1,619,494	+		PFLU_RS07260	0.64	-1.1
1,619,495	-		PFLU_RS07260	0.64	-0.4
1,619,495	-		PFLU_RS07260	0.64	+0.5
1,619,495	-		PFLU_RS07260	0.64	-0.5
1,619,495	-		PFLU_RS07260	0.64	+0.1
1,619,495	-		PFLU_RS07260	0.64	-0.2
1,619,495	-		PFLU_RS07260	0.64	-0.6
1,619,495	-		PFLU_RS07260	0.64	-1.0
1,619,495	-		PFLU_RS07260	0.64	+0.3
1,619,524	+		PFLU_RS07260	0.66	-0.3
1,619,524	+		PFLU_RS07260	0.66	-0.2
1,619,524	+		PFLU_RS07260	0.66	+2.1
1,619,524	+		PFLU_RS07260	0.66	-0.9
1,619,524	+		PFLU_RS07260	0.66	+0.7
1,619,525	-		PFLU_RS07260	0.66	+0.5
1,619,525	-		PFLU_RS07260	0.66	+1.4
1,619,525	-		PFLU_RS07260	0.66	-0.2
1,619,525	-		PFLU_RS07260	0.66	-0.3
1,619,525	-		PFLU_RS07260	0.66	-1.4
1,619,525	-		PFLU_RS07260	0.66	-0.6
1,619,525	-		PFLU_RS07260	0.66	+0.2
1,619,567	+		PFLU_RS07260	0.70	-0.5
1,619,572	+		PFLU_RS07260	0.71	-0.6
1,619,572	+		PFLU_RS07260	0.71	-0.0
1,619,572	+		PFLU_RS07260	0.71	+0.8
1,619,573	-		PFLU_RS07260	0.71	+0.2
1,619,573	-		PFLU_RS07260	0.71	+0.5
1,619,650	+		PFLU_RS07260	0.78	+1.0
1,619,651	-		PFLU_RS07260	0.78	+0.4
1,619,651	-		PFLU_RS07260	0.78	+0.2
1,619,651	-		PFLU_RS07260	0.78	+0.9
1,619,651	-		PFLU_RS07260	0.78	+1.8
1,619,651	-		PFLU_RS07260	0.78	-0.7
1,619,664	-		PFLU_RS07260	0.79	+1.1
1,619,665	+		PFLU_RS07260	0.80	-0.0
1,619,665	+		PFLU_RS07260	0.80	-0.1
1,619,665	+		PFLU_RS07260	0.80	+0.1
1,619,881	+				+1.4
1,619,881	+				-0.2
1,619,881	+				-0.7
1,619,881	+				-0.7
1,619,882	-				+0.8
1,619,882	-				-0.4
1,619,882	-				+0.9
1,619,882	-				+0.1
1,619,882	-				+0.9
1,619,894	-				-0.2
1,619,894	-				+0.7
1,619,894	-				+0.6
1,619,894	-				-1.3
1,619,894	-				-1.4
1,619,894	-				+0.6
1,619,894	-				+0.8
1,619,899	-				+1.0
1,619,899	-				-0.2
1,619,899	-				-0.2
1,619,899	-				-0.5
1,619,899	-				-0.5
1,619,899	-				-0.1
1,619,899	-				-1.0
1,619,899	-				+1.1
1,619,904	-				+0.3
1,619,904	-				-0.9
1,619,904	-				+1.2
1,619,964	+				-0.7
1,619,965	-				+0.4
1,619,988	-				+0.8
1,619,988	-				-0.8
1,620,031	+				+1.8
1,620,031	+				+0.5
1,620,031	+				+0.0
1,620,031	+				+1.8
1,620,081	-				-0.0
1,620,177	+		PFLU_RS07265	0.27	+0.8
1,620,177	+		PFLU_RS07265	0.27	+0.3
1,620,178	-		PFLU_RS07265	0.28	+0.8
1,620,178	-		PFLU_RS07265	0.28	+0.5
1,620,178	-		PFLU_RS07265	0.28	+0.9
1,620,178	-		PFLU_RS07265	0.28	+0.1
1,620,190	-		PFLU_RS07265	0.30	-0.1
1,620,191	+		PFLU_RS07265	0.30	-0.3
1,620,191	+		PFLU_RS07265	0.30	-0.7
1,620,191	+		PFLU_RS07265	0.30	+1.9
1,620,191	+		PFLU_RS07265	0.30	-1.2
1,620,191	+		PFLU_RS07265	0.30	+1.2
1,620,192	-		PFLU_RS07265	0.31	-0.4
1,620,192	-		PFLU_RS07265	0.31	-0.1
1,620,192	-		PFLU_RS07265	0.31	+1.0
1,620,192	-		PFLU_RS07265	0.31	-1.9
1,620,192	-		PFLU_RS07265	0.31	+0.5
1,620,192	-		PFLU_RS07265	0.31	-0.7
1,620,192	-		PFLU_RS07265	0.31	-1.6
1,620,192	-		PFLU_RS07265	0.31	-0.9
1,620,354	+		PFLU_RS07265	0.65	-0.8
1,620,355	-		PFLU_RS07265	0.65	+1.4
1,620,411	+		PFLU_RS07265	0.77	+2.2
1,620,417	+		PFLU_RS07265	0.78	-0.2
1,620,417	+		PFLU_RS07265	0.78	+0.7
1,620,417	+		PFLU_RS07265	0.78	-0.5
1,620,417	+		PFLU_RS07265	0.78	+0.4
1,620,417	+		PFLU_RS07265	0.78	+1.2
1,620,417	+		PFLU_RS07265	0.78	+1.0
1,620,417	+		PFLU_RS07265	0.78	+0.3
1,620,417	+		PFLU_RS07265	0.78	+1.1
1,620,417	+		PFLU_RS07265	0.78	-0.8
1,620,417	+		PFLU_RS07265	0.78	-0.4
1,620,417	+		PFLU_RS07265	0.78	+2.4
1,620,417	+		PFLU_RS07265	0.78	-0.8
1,620,418	-		PFLU_RS07265	0.78	-0.3
1,620,418	-		PFLU_RS07265	0.78	-1.8
1,620,418	-		PFLU_RS07265	0.78	-0.7
1,620,418	-		PFLU_RS07265	0.78	-0.2
1,620,418	-		PFLU_RS07265	0.78	-0.9
1,620,418	-		PFLU_RS07265	0.78	+0.4
1,620,418	-		PFLU_RS07265	0.78	-0.4
1,620,418	-		PFLU_RS07265	0.78	-0.4
1,620,418	-		PFLU_RS07265	0.78	+0.1
1,620,418	-		PFLU_RS07265	0.78	-2.1
1,620,494	+				+1.2
1,620,495	-				-0.5
1,620,495	-				+0.2
1,620,533	+				+0.6
1,620,533	+				+0.4
1,620,533	+				+0.2
1,620,533	+				-0.9
1,620,533	+				+0.9
1,620,533	+				+1.5
1,620,534	-				-0.5
1,620,534	-				-0.5
1,620,534	-				-0.3
1,620,534	-				-0.3
1,620,534	-				+0.6
1,620,534	-				-0.5
1,620,534	-				-0.5
1,620,534	-				-0.1
1,620,534	-				-0.1
1,620,534	-				-0.8
1,620,534	-				-0.1
1,620,534	-				-0.2
1,620,534	-				-1.6
1,620,534	-				-0.7
1,620,534	-				-0.3
1,620,534	-				+0.8
1,620,534	-				-0.8
1,620,534	-				-0.4
1,620,652	-		PFLU_RS07270	0.21	-0.2
1,620,695	+		PFLU_RS07270	0.29	+0.6
1,620,695	+		PFLU_RS07270	0.29	+0.2
1,620,695	+		PFLU_RS07270	0.29	-0.1
1,620,695	+		PFLU_RS07270	0.29	+0.4
1,620,695	+		PFLU_RS07270	0.29	-0.1
1,620,695	+		PFLU_RS07270	0.29	+0.3
1,620,695	+		PFLU_RS07270	0.29	+1.8
1,620,696	-		PFLU_RS07270	0.29	-0.0
1,620,696	-		PFLU_RS07270	0.29	+1.2
1,620,696	-		PFLU_RS07270	0.29	-0.0
1,620,696	-		PFLU_RS07270	0.29	+1.1
1,620,791	+		PFLU_RS07270	0.46	+1.1
1,620,791	+		PFLU_RS07270	0.46	-0.4
1,620,791	+		PFLU_RS07270	0.46	+1.4
1,620,791	+		PFLU_RS07270	0.46	+0.9
1,620,791	+		PFLU_RS07270	0.46	-1.7
1,620,791	+		PFLU_RS07270	0.46	+0.5
1,620,792	-		PFLU_RS07270	0.46	+1.4
1,620,792	-		PFLU_RS07270	0.46	+2.3
1,620,792	-		PFLU_RS07270	0.46	+1.0
1,620,800	+		PFLU_RS07270	0.48	+2.5
1,620,800	+		PFLU_RS07270	0.48	+0.5
1,620,800	+		PFLU_RS07270	0.48	+0.3
1,620,800	+		PFLU_RS07270	0.48	-0.5
1,620,800	+		PFLU_RS07270	0.48	-0.8
1,620,800	+		PFLU_RS07270	0.48	-1.0
1,620,800	+		PFLU_RS07270	0.48	+0.4
1,620,801	-		PFLU_RS07270	0.48	-0.9
1,620,801	-		PFLU_RS07270	0.48	+1.2
1,620,801	-		PFLU_RS07270	0.48	-0.4
1,620,801	-		PFLU_RS07270	0.48	+1.0
1,620,801	-		PFLU_RS07270	0.48	+0.2
1,620,801	-		PFLU_RS07270	0.48	+1.8
1,620,801	-		PFLU_RS07270	0.48	+2.0
1,620,801	-		PFLU_RS07270	0.48	-0.8
1,620,801	-		PFLU_RS07270	0.48	-0.4
1,620,801	-		PFLU_RS07270	0.48	-1.3
1,620,841	+		PFLU_RS07270	0.55	+0.1
1,620,841	+		PFLU_RS07270	0.55	+0.6
1,621,056	+				+0.2
1,621,056	+				+0.3
1,621,057	-				+1.5
1,621,103	+				-0.7
1,621,104	-				+0.7
1,621,137	-				+0.0
1,621,180	+				-0.3
1,621,180	+				+1.4
1,621,200	-				-3.0
1,621,200	-				-0.9
1,621,200	-				+0.1
1,621,268	+				-0.6
1,621,268	+				+0.4
1,621,268	+				-1.8
1,621,269	-				-2.4
1,621,269	-				+0.8
1,621,269	-				+0.1
1,621,269	-				-0.9
1,621,269	-				+1.0
1,621,269	-				-1.8
1,621,298	-				-1.0
1,621,308	+				+0.9
1,621,308	+				-0.9
1,621,308	+				+0.2
1,621,308	+				-0.1
1,621,329	-				-1.1
1,621,380	+				-1.7
1,621,380	+				+1.5