Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02100

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02090 and PFLU_RS02095 overlap by 4 nucleotidesPFLU_RS02095 and PFLU_RS02100 overlap by 4 nucleotidesPFLU_RS02100 and PFLU_RS02105 overlap by 4 nucleotides PFLU_RS02090: PFLU_RS02090 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 471,318 to 472,484 _RS02090 PFLU_RS02095: PFLU_RS02095 - hypothetical protein, at 472,481 to 472,963 _RS02095 PFLU_RS02100: PFLU_RS02100 - class I SAM-dependent methyltransferase, at 472,960 to 473,709 _RS02100 PFLU_RS02105: PFLU_RS02105 - NAD(P)/FAD-dependent oxidoreductase, at 473,706 to 474,953 _RS02105 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 472.033 kb on + strand, within PFLU_RS02090at 472.033 kb on + strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.034 kb on - strand, within PFLU_RS02090at 472.102 kb on + strand, within PFLU_RS02090at 472.102 kb on + strand, within PFLU_RS02090at 472.103 kb on - strand, within PFLU_RS02090at 472.109 kb on - strand, within PFLU_RS02090at 472.109 kb on - strand, within PFLU_RS02090at 472.109 kb on - strand, within PFLU_RS02090at 472.196 kb on + strand, within PFLU_RS02090at 472.474 kb on + strandat 472.563 kb on + strand, within PFLU_RS02095at 472.706 kb on + strand, within PFLU_RS02095at 473.097 kb on - strand, within PFLU_RS02100at 473.097 kb on - strand, within PFLU_RS02100at 473.156 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.225 kb on + strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.226 kb on - strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.398 kb on + strand, within PFLU_RS02100at 473.399 kb on - strand, within PFLU_RS02100at 473.399 kb on - strand, within PFLU_RS02100at 473.399 kb on - strand, within PFLU_RS02100at 473.468 kb on - strand, within PFLU_RS02100at 473.488 kb on + strand, within PFLU_RS02100at 473.488 kb on + strand, within PFLU_RS02100at 473.489 kb on - strand, within PFLU_RS02100at 473.489 kb on - strand, within PFLU_RS02100at 473.489 kb on - strand, within PFLU_RS02100at 473.489 kb on - strand, within PFLU_RS02100at 473.489 kb on - strand, within PFLU_RS02100at 473.666 kb on + strandat 473.666 kb on + strandat 473.666 kb on + strandat 473.667 kb on - strandat 473.667 kb on - strandat 473.673 kb on + strandat 473.673 kb on + strandat 473.673 kb on + strandat 473.674 kb on - strandat 473.674 kb on - strandat 473.674 kb on - strandat 473.674 kb on - strandat 473.674 kb on - strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.677 kb on + strandat 473.678 kb on - strandat 473.678 kb on - strandat 473.678 kb on - strandat 473.678 kb on - strandat 473.678 kb on - strandat 473.678 kb on - strandat 473.681 kb on + strandat 473.682 kb on - strandat 473.682 kb on - strandat 473.682 kb on - strandat 473.697 kb on + strandat 473.697 kb on + strandat 473.698 kb on - strandat 473.698 kb on - strandat 473.698 kb on - strandat 473.710 kb on - strandat 473.878 kb on + strand, within PFLU_RS02105at 473.879 kb on - strand, within PFLU_RS02105at 473.893 kb on + strand, within PFLU_RS02105at 473.893 kb on + strand, within PFLU_RS02105at 473.894 kb on - strand, within PFLU_RS02105at 474.137 kb on + strand, within PFLU_RS02105at 474.138 kb on - strand, within PFLU_RS02105at 474.314 kb on + strand, within PFLU_RS02105at 474.314 kb on + strand, within PFLU_RS02105at 474.526 kb on + strand, within PFLU_RS02105at 474.527 kb on - strand, within PFLU_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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472,033 + PFLU_RS02090 0.61 -0.5
472,033 + PFLU_RS02090 0.61 +0.6
472,034 - PFLU_RS02090 0.61 +0.8
472,034 - PFLU_RS02090 0.61 -0.4
472,034 - PFLU_RS02090 0.61 +0.7
472,034 - PFLU_RS02090 0.61 +1.7
472,102 + PFLU_RS02090 0.67 +0.2
472,102 + PFLU_RS02090 0.67 +1.1
472,103 - PFLU_RS02090 0.67 +0.1
472,109 - PFLU_RS02090 0.68 -0.6
472,109 - PFLU_RS02090 0.68 +1.6
472,109 - PFLU_RS02090 0.68 -0.2
472,196 + PFLU_RS02090 0.75 +1.0
472,474 + +0.5
472,563 + PFLU_RS02095 0.17 +0.0
472,706 + PFLU_RS02095 0.47 -0.6
473,097 - PFLU_RS02100 0.18 -0.1
473,097 - PFLU_RS02100 0.18 -2.7
473,156 + PFLU_RS02100 0.26 -0.4
473,225 + PFLU_RS02100 0.35 +0.9
473,225 + PFLU_RS02100 0.35 +1.4
473,225 + PFLU_RS02100 0.35 +1.0
473,225 + PFLU_RS02100 0.35 +0.1
473,225 + PFLU_RS02100 0.35 -1.1
473,225 + PFLU_RS02100 0.35 +0.7
473,225 + PFLU_RS02100 0.35 +0.1
473,225 + PFLU_RS02100 0.35 -0.3
473,225 + PFLU_RS02100 0.35 -0.1
473,225 + PFLU_RS02100 0.35 +0.1
473,225 + PFLU_RS02100 0.35 +1.0
473,226 - PFLU_RS02100 0.35 -0.0
473,226 - PFLU_RS02100 0.35 +0.7
473,226 - PFLU_RS02100 0.35 -0.1
473,226 - PFLU_RS02100 0.35 -0.2
473,226 - PFLU_RS02100 0.35 +2.5
473,398 + PFLU_RS02100 0.58 +0.9
473,398 + PFLU_RS02100 0.58 +0.3
473,398 + PFLU_RS02100 0.58 -0.7
473,399 - PFLU_RS02100 0.59 +0.0
473,399 - PFLU_RS02100 0.59 +0.1
473,399 - PFLU_RS02100 0.59 +1.5
473,468 - PFLU_RS02100 0.68 -0.2
473,488 + PFLU_RS02100 0.70 +0.4
473,488 + PFLU_RS02100 0.70 +0.2
473,489 - PFLU_RS02100 0.71 -1.1
473,489 - PFLU_RS02100 0.71 -0.2
473,489 - PFLU_RS02100 0.71 -1.2
473,489 - PFLU_RS02100 0.71 -0.7
473,489 - PFLU_RS02100 0.71 +0.2
473,666 + +1.6
473,666 + -0.8
473,666 + -0.4
473,667 - -0.2
473,667 - +0.5
473,673 + -0.1
473,673 + +1.6
473,673 + -0.5
473,674 - -0.2
473,674 - +1.4
473,674 - -0.0
473,674 - +0.4
473,674 - -0.7
473,677 + +0.8
473,677 + +1.9
473,677 + +1.2
473,677 + +0.9
473,677 + -1.8
473,677 + -0.6
473,677 + +0.1
473,677 + -0.2
473,678 - -0.0
473,678 - +1.7
473,678 - +0.8
473,678 - +1.0
473,678 - -0.2
473,678 - -0.1
473,681 + +0.6
473,682 - -1.3
473,682 - +0.1
473,682 - -0.4
473,697 + +1.6
473,697 + +0.3
473,698 - +0.2
473,698 - +0.6
473,698 - +0.6
473,710 - -0.0
473,878 + PFLU_RS02105 0.14 +0.9
473,879 - PFLU_RS02105 0.14 +0.3
473,893 + PFLU_RS02105 0.15 +0.6
473,893 + PFLU_RS02105 0.15 +0.0
473,894 - PFLU_RS02105 0.15 +0.1
474,137 + PFLU_RS02105 0.35 +0.7
474,138 - PFLU_RS02105 0.35 +0.3
474,314 + PFLU_RS02105 0.49 -0.1
474,314 + PFLU_RS02105 0.49 +0.3
474,526 + PFLU_RS02105 0.66 -0.2
474,527 - PFLU_RS02105 0.66 -0.4

Or see this region's nucleotide sequence