Strain Fitness in Pseudomonas sp. S08-1 around OH686_22450

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22445 and OH686_22450 are separated by 99 nucleotidesOH686_22450 and OH686_22455 are separated by 21 nucleotidesOH686_22455 and OH686_22460 are separated by 94 nucleotides OH686_22445: OH686_22445 - Transcriptional regulator, LysR family, at 4,562,017 to 4,562,973 _22445 OH686_22450: OH686_22450 - putative membrane protein, at 4,563,073 to 4,563,825 _22450 OH686_22455: OH686_22455 - Transcriptional regulator, LysR family, at 4,563,847 to 4,564,701 _22455 OH686_22460: OH686_22460 - hypothetical protein, at 4,564,796 to 4,565,032 _22460 Position (kb) 4563 4564Strain fitness (log2 ratio) -2 -1 0 1 2at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.465 kb on - strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.937 kb on - strandat 4562.937 kb on - strandat 4563.044 kb on + strandat 4563.044 kb on + strandat 4563.044 kb on + strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.045 kb on - strandat 4563.116 kb on + strandat 4563.117 kb on - strandat 4563.117 kb on - strandat 4563.265 kb on + strand, within OH686_22450at 4563.265 kb on + strand, within OH686_22450at 4563.265 kb on + strand, within OH686_22450at 4563.265 kb on + strand, within OH686_22450at 4563.265 kb on + strand, within OH686_22450at 4563.266 kb on - strand, within OH686_22450at 4563.267 kb on + strand, within OH686_22450at 4563.349 kb on + strand, within OH686_22450at 4563.349 kb on + strand, within OH686_22450at 4563.350 kb on - strand, within OH686_22450at 4563.350 kb on - strand, within OH686_22450at 4563.350 kb on - strand, within OH686_22450at 4563.350 kb on - strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.418 kb on + strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.419 kb on - strand, within OH686_22450at 4563.425 kb on + strand, within OH686_22450at 4563.425 kb on + strand, within OH686_22450at 4563.425 kb on + strand, within OH686_22450at 4563.425 kb on + strand, within OH686_22450at 4563.426 kb on - strand, within OH686_22450at 4563.426 kb on - strand, within OH686_22450at 4563.426 kb on - strand, within OH686_22450at 4563.438 kb on + strand, within OH686_22450at 4563.438 kb on + strand, within OH686_22450at 4563.438 kb on + strand, within OH686_22450at 4563.438 kb on + strand, within OH686_22450at 4563.439 kb on - strand, within OH686_22450at 4563.439 kb on - strand, within OH686_22450at 4563.467 kb on + strand, within OH686_22450at 4563.467 kb on + strand, within OH686_22450at 4563.467 kb on + strand, within OH686_22450at 4563.467 kb on + strand, within OH686_22450at 4563.468 kb on - strand, within OH686_22450at 4563.468 kb on - strand, within OH686_22450at 4563.468 kb on - strand, within OH686_22450at 4563.468 kb on - strand, within OH686_22450at 4563.468 kb on - strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.655 kb on + strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.656 kb on - strand, within OH686_22450at 4563.823 kb on + strandat 4563.824 kb on - strandat 4563.848 kb on + strandat 4563.849 kb on - strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.868 kb on + strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4563.869 kb on - strandat 4564.068 kb on + strand, within OH686_22455at 4564.068 kb on + strand, within OH686_22455at 4564.068 kb on + strand, within OH686_22455at 4564.068 kb on + strand, within OH686_22455at 4564.069 kb on - strand, within OH686_22455at 4564.069 kb on - strand, within OH686_22455at 4564.070 kb on + strand, within OH686_22455at 4564.070 kb on + strand, within OH686_22455at 4564.070 kb on + strand, within OH686_22455at 4564.071 kb on - strand, within OH686_22455at 4564.071 kb on - strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.225 kb on + strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.226 kb on - strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.385 kb on + strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.386 kb on - strand, within OH686_22455at 4564.481 kb on + strand, within OH686_22455at 4564.817 kb on + strandat 4564.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,562,141 + OH686_22445 0.13 +0.0
4,562,141 + OH686_22445 0.13 +0.8
4,562,141 + OH686_22445 0.13 -1.9
4,562,141 + OH686_22445 0.13 +0.7
4,562,141 + OH686_22445 0.13 -0.7
4,562,141 + OH686_22445 0.13 +0.1
4,562,141 + OH686_22445 0.13 -0.4
4,562,141 + OH686_22445 0.13 -1.4
4,562,141 + OH686_22445 0.13 -0.1
4,562,141 + OH686_22445 0.13 +0.3
4,562,141 + OH686_22445 0.13 -0.9
4,562,141 + OH686_22445 0.13 -0.7
4,562,141 + OH686_22445 0.13 -0.2
4,562,141 + OH686_22445 0.13 -1.1
4,562,141 + OH686_22445 0.13 +0.3
4,562,142 - OH686_22445 0.13 -0.4
4,562,142 - OH686_22445 0.13 -0.8
4,562,142 - OH686_22445 0.13 +0.3
4,562,142 - OH686_22445 0.13 -0.2
4,562,142 - OH686_22445 0.13 -0.4
4,562,142 - OH686_22445 0.13 -0.2
4,562,142 - OH686_22445 0.13 -0.4
4,562,142 - OH686_22445 0.13 -0.6
4,562,142 - OH686_22445 0.13 +0.3
4,562,142 - OH686_22445 0.13 +0.7
4,562,142 - OH686_22445 0.13 -0.7
4,562,142 - OH686_22445 0.13 +0.0
4,562,142 - OH686_22445 0.13 +0.3
4,562,142 - OH686_22445 0.13 -0.8
4,562,213 + OH686_22445 0.20 +0.1
4,562,213 + OH686_22445 0.20 -0.8
4,562,213 + OH686_22445 0.20 -0.1
4,562,213 + OH686_22445 0.20 -1.0
4,562,214 - OH686_22445 0.21 +0.0
4,562,214 - OH686_22445 0.21 -0.1
4,562,214 - OH686_22445 0.21 +0.1
4,562,214 - OH686_22445 0.21 -0.2
4,562,214 - OH686_22445 0.21 +0.2
4,562,214 - OH686_22445 0.21 -0.7
4,562,214 - OH686_22445 0.21 +0.4
4,562,214 - OH686_22445 0.21 -0.2
4,562,444 + OH686_22445 0.45 -0.5
4,562,444 + OH686_22445 0.45 -0.3
4,562,444 + OH686_22445 0.45 +0.5
4,562,444 + OH686_22445 0.45 +0.7
4,562,444 + OH686_22445 0.45 -0.2
4,562,445 - OH686_22445 0.45 +0.3
4,562,445 - OH686_22445 0.45 -0.6
4,562,445 - OH686_22445 0.45 +0.0
4,562,445 - OH686_22445 0.45 -2.6
4,562,445 - OH686_22445 0.45 -0.5
4,562,445 - OH686_22445 0.45 -0.2
4,562,464 + OH686_22445 0.47 -0.6
4,562,464 + OH686_22445 0.47 +0.3
4,562,464 + OH686_22445 0.47 -0.4
4,562,465 - OH686_22445 0.47 +1.1
4,562,590 + OH686_22445 0.60 +0.1
4,562,590 + OH686_22445 0.60 -0.8
4,562,590 + OH686_22445 0.60 -0.0
4,562,590 + OH686_22445 0.60 -1.2
4,562,590 + OH686_22445 0.60 -0.7
4,562,590 + OH686_22445 0.60 -1.5
4,562,591 - OH686_22445 0.60 -0.7
4,562,591 - OH686_22445 0.60 -1.7
4,562,591 - OH686_22445 0.60 -0.1
4,562,591 - OH686_22445 0.60 -0.0
4,562,591 - OH686_22445 0.60 -0.2
4,562,591 - OH686_22445 0.60 +0.1
4,562,591 - OH686_22445 0.60 +0.5
4,562,591 - OH686_22445 0.60 -1.0
4,562,591 - OH686_22445 0.60 +0.4
4,562,591 - OH686_22445 0.60 -0.1
4,562,591 - OH686_22445 0.60 +2.1
4,562,936 + -0.2
4,562,936 + -1.2
4,562,936 + -0.2
4,562,936 + -0.0
4,562,936 + -0.2
4,562,937 - -0.2
4,562,937 - -0.1
4,563,044 + -0.2
4,563,044 + +0.5
4,563,044 + +0.5
4,563,045 - -0.1
4,563,045 - -1.5
4,563,045 - -0.2
4,563,045 - -0.4
4,563,045 - +0.3
4,563,045 - +0.3
4,563,045 - -0.1
4,563,045 - +0.9
4,563,045 - -0.4
4,563,045 - +0.2
4,563,116 + -0.0
4,563,117 - -1.2
4,563,117 - +0.3
4,563,265 + OH686_22450 0.25 -0.2
4,563,265 + OH686_22450 0.25 +0.3
4,563,265 + OH686_22450 0.25 -0.5
4,563,265 + OH686_22450 0.25 -0.5
4,563,265 + OH686_22450 0.25 +0.6
4,563,266 - OH686_22450 0.26 +0.1
4,563,267 + OH686_22450 0.26 -1.5
4,563,349 + OH686_22450 0.37 -2.1
4,563,349 + OH686_22450 0.37 +0.5
4,563,350 - OH686_22450 0.37 +0.4
4,563,350 - OH686_22450 0.37 +0.4
4,563,350 - OH686_22450 0.37 -0.4
4,563,350 - OH686_22450 0.37 +0.3
4,563,418 + OH686_22450 0.46 -0.9
4,563,418 + OH686_22450 0.46 +0.5
4,563,418 + OH686_22450 0.46 -1.0
4,563,418 + OH686_22450 0.46 +0.0
4,563,418 + OH686_22450 0.46 -0.5
4,563,418 + OH686_22450 0.46 -0.2
4,563,418 + OH686_22450 0.46 +0.2
4,563,418 + OH686_22450 0.46 -0.6
4,563,418 + OH686_22450 0.46 +0.8
4,563,418 + OH686_22450 0.46 -1.2
4,563,419 - OH686_22450 0.46 +1.1
4,563,419 - OH686_22450 0.46 +1.0
4,563,419 - OH686_22450 0.46 +0.5
4,563,419 - OH686_22450 0.46 -1.1
4,563,419 - OH686_22450 0.46 -0.6
4,563,419 - OH686_22450 0.46 +0.1
4,563,419 - OH686_22450 0.46 +0.5
4,563,419 - OH686_22450 0.46 +0.9
4,563,425 + OH686_22450 0.47 +0.1
4,563,425 + OH686_22450 0.47 -0.8
4,563,425 + OH686_22450 0.47 +0.8
4,563,425 + OH686_22450 0.47 -0.1
4,563,426 - OH686_22450 0.47 +0.1
4,563,426 - OH686_22450 0.47 -0.2
4,563,426 - OH686_22450 0.47 -0.5
4,563,438 + OH686_22450 0.48 +0.1
4,563,438 + OH686_22450 0.48 -0.0
4,563,438 + OH686_22450 0.48 -0.9
4,563,438 + OH686_22450 0.48 -0.8
4,563,439 - OH686_22450 0.49 -1.6
4,563,439 - OH686_22450 0.49 +0.7
4,563,467 + OH686_22450 0.52 +0.1
4,563,467 + OH686_22450 0.52 +0.1
4,563,467 + OH686_22450 0.52 +0.6
4,563,467 + OH686_22450 0.52 +0.1
4,563,468 - OH686_22450 0.52 +0.2
4,563,468 - OH686_22450 0.52 +0.6
4,563,468 - OH686_22450 0.52 -0.4
4,563,468 - OH686_22450 0.52 -0.6
4,563,468 - OH686_22450 0.52 -0.6
4,563,655 + OH686_22450 0.77 -0.5
4,563,655 + OH686_22450 0.77 +0.2
4,563,655 + OH686_22450 0.77 -0.0
4,563,655 + OH686_22450 0.77 -0.1
4,563,655 + OH686_22450 0.77 -0.0
4,563,655 + OH686_22450 0.77 -1.0
4,563,655 + OH686_22450 0.77 +0.5
4,563,655 + OH686_22450 0.77 -0.5
4,563,655 + OH686_22450 0.77 +0.1
4,563,656 - OH686_22450 0.77 +0.4
4,563,656 - OH686_22450 0.77 -0.4
4,563,656 - OH686_22450 0.77 +0.9
4,563,656 - OH686_22450 0.77 +0.8
4,563,656 - OH686_22450 0.77 +0.3
4,563,656 - OH686_22450 0.77 -0.4
4,563,656 - OH686_22450 0.77 -0.4
4,563,656 - OH686_22450 0.77 +0.1
4,563,823 + -0.2
4,563,824 - +1.2
4,563,848 + -0.7
4,563,849 - -0.3
4,563,868 + +1.1
4,563,868 + -1.2
4,563,868 + +0.2
4,563,868 + +1.8
4,563,868 + -0.2
4,563,868 + +1.5
4,563,868 + +0.3
4,563,868 + -0.5
4,563,868 + +1.3
4,563,868 + +1.7
4,563,868 + -0.4
4,563,868 + -0.0
4,563,869 - -0.6
4,563,869 - -1.0
4,563,869 - +0.3
4,563,869 - +0.6
4,563,869 - -0.0
4,563,869 - -0.6
4,563,869 - -0.0
4,563,869 - -0.6
4,563,869 - +0.6
4,564,068 + OH686_22455 0.26 -0.8
4,564,068 + OH686_22455 0.26 -0.6
4,564,068 + OH686_22455 0.26 +0.1
4,564,068 + OH686_22455 0.26 -0.0
4,564,069 - OH686_22455 0.26 -0.1
4,564,069 - OH686_22455 0.26 -0.6
4,564,070 + OH686_22455 0.26 +0.1
4,564,070 + OH686_22455 0.26 -0.4
4,564,070 + OH686_22455 0.26 +0.3
4,564,071 - OH686_22455 0.26 +0.5
4,564,071 - OH686_22455 0.26 +0.4
4,564,225 + OH686_22455 0.44 +0.9
4,564,225 + OH686_22455 0.44 +1.7
4,564,225 + OH686_22455 0.44 -0.4
4,564,225 + OH686_22455 0.44 +0.1
4,564,225 + OH686_22455 0.44 +0.7
4,564,225 + OH686_22455 0.44 -0.8
4,564,226 - OH686_22455 0.44 -0.2
4,564,226 - OH686_22455 0.44 +0.4
4,564,226 - OH686_22455 0.44 -0.4
4,564,226 - OH686_22455 0.44 +0.3
4,564,226 - OH686_22455 0.44 +0.2
4,564,226 - OH686_22455 0.44 -0.2
4,564,385 + OH686_22455 0.63 +0.3
4,564,385 + OH686_22455 0.63 -2.4
4,564,385 + OH686_22455 0.63 +0.6
4,564,385 + OH686_22455 0.63 -0.0
4,564,385 + OH686_22455 0.63 +1.1
4,564,385 + OH686_22455 0.63 +1.1
4,564,385 + OH686_22455 0.63 -0.9
4,564,385 + OH686_22455 0.63 -0.1
4,564,386 - OH686_22455 0.63 +1.0
4,564,386 - OH686_22455 0.63 +0.0
4,564,386 - OH686_22455 0.63 +0.6
4,564,386 - OH686_22455 0.63 +0.0
4,564,386 - OH686_22455 0.63 -0.7
4,564,386 - OH686_22455 0.63 +0.3
4,564,386 - OH686_22455 0.63 -0.5
4,564,386 - OH686_22455 0.63 +0.4
4,564,481 + OH686_22455 0.74 -2.4
4,564,817 + -0.9
4,564,818 - +0.2

Or see this region's nucleotide sequence