Strain Fitness in Pseudomonas sp. S08-1 around OH686_17060

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17050 and OH686_17055 are separated by 147 nucleotidesOH686_17055 and OH686_17060 are separated by 103 nucleotidesOH686_17060 and OH686_17065 are separated by 120 nucleotides OH686_17050: OH686_17050 - DNA repair protein RecN, at 3,558,187 to 3,559,860 _17050 OH686_17055: OH686_17055 - Heat shock protein GrpE, at 3,560,008 to 3,560,577 _17055 OH686_17060: OH686_17060 - chaperone protein DnaK, at 3,560,681 to 3,562,597 _17060 OH686_17065: OH686_17065 - chaperone protein DnaJ, at 3,562,718 to 3,563,848 _17065 Position (kb) 3560 3561 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1at 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.832 kb on + strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.833 kb on - strandat 3559.894 kb on + strandat 3559.897 kb on - strandat 3559.922 kb on + strandat 3559.923 kb on - strandat 3559.952 kb on + strandat 3559.952 kb on + strandat 3559.953 kb on - strandat 3559.954 kb on + strandat 3559.954 kb on + strandat 3559.954 kb on + strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.955 kb on - strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.990 kb on + strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.991 kb on - strandat 3559.992 kb on + strandat 3559.992 kb on + strandat 3559.992 kb on + strandat 3559.992 kb on + strandat 3559.992 kb on + strandat 3559.992 kb on + strandat 3559.993 kb on - strandat 3559.993 kb on - strandat 3560.604 kb on + strandat 3562.462 kb on + strandat 3562.462 kb on + strandat 3562.462 kb on + strandat 3562.487 kb on + strandat 3562.487 kb on + strandat 3562.487 kb on + strandat 3562.487 kb on + strandat 3562.487 kb on + strandat 3562.487 kb on + strandat 3562.488 kb on - strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.595 kb on + strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.596 kb on - strandat 3562.600 kb on + strandat 3562.600 kb on + strandat 3562.703 kb on + strandat 3562.703 kb on + strandat 3562.704 kb on - strandat 3562.704 kb on - strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.717 kb on + strandat 3562.718 kb on - strandat 3562.718 kb on - strandat 3563.519 kb on + strand, within OH686_17065at 3563.520 kb on - strand, within OH686_17065at 3563.520 kb on - strand, within OH686_17065

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,559,832 + +0.9
3,559,832 + -1.1
3,559,832 + +1.0
3,559,832 + +0.3
3,559,832 + -0.8
3,559,832 + -0.1
3,559,832 + -0.7
3,559,832 + -0.3
3,559,833 - +0.9
3,559,833 - -0.3
3,559,833 - +0.4
3,559,833 - +0.4
3,559,833 - +0.3
3,559,833 - +0.1
3,559,833 - +0.2
3,559,833 - +0.4
3,559,833 - +1.2
3,559,833 - +1.2
3,559,894 + -0.1
3,559,897 - +0.2
3,559,922 + -0.4
3,559,923 - -0.1
3,559,952 + -0.3
3,559,952 + +0.1
3,559,953 - -0.4
3,559,954 + -0.5
3,559,954 + +1.1
3,559,954 + -0.1
3,559,955 - -1.7
3,559,955 - -1.5
3,559,955 - -1.1
3,559,955 - +1.0
3,559,955 - -0.0
3,559,955 - +0.1
3,559,955 - -1.1
3,559,955 - +0.0
3,559,955 - -0.3
3,559,955 - -1.3
3,559,955 - -1.3
3,559,990 + -0.5
3,559,990 + +0.6
3,559,990 + +0.0
3,559,990 + +1.0
3,559,990 + -0.3
3,559,990 + +1.0
3,559,990 + -1.0
3,559,990 + +0.5
3,559,990 + +0.1
3,559,990 + -0.3
3,559,990 + -1.0
3,559,990 + -0.2
3,559,991 - -2.2
3,559,991 - +0.0
3,559,991 - -2.3
3,559,991 - -0.6
3,559,991 - -2.0
3,559,991 - -1.3
3,559,991 - -2.1
3,559,991 - -2.7
3,559,991 - -1.1
3,559,991 - -1.3
3,559,992 + -0.3
3,559,992 + +1.0
3,559,992 + +0.2
3,559,992 + +0.2
3,559,992 + -1.4
3,559,992 + +0.3
3,559,993 - -3.7
3,559,993 - -0.4
3,560,604 + -0.4
3,562,462 + +0.0
3,562,462 + -0.6
3,562,462 + -2.4
3,562,487 + -1.1
3,562,487 + -0.6
3,562,487 + -0.7
3,562,487 + -1.3
3,562,487 + -1.7
3,562,487 + -0.9
3,562,488 - -0.3
3,562,595 + -0.6
3,562,595 + -0.2
3,562,595 + -1.5
3,562,595 + -0.3
3,562,595 + +0.3
3,562,595 + +0.5
3,562,595 + -0.8
3,562,595 + +0.0
3,562,595 + -0.3
3,562,595 + +0.8
3,562,595 + +1.0
3,562,595 + -0.5
3,562,595 + -0.2
3,562,595 + +0.2
3,562,595 + +1.0
3,562,596 - +0.1
3,562,596 - +0.4
3,562,596 - -1.1
3,562,596 - -0.8
3,562,596 - +0.4
3,562,596 - +0.2
3,562,596 - -0.2
3,562,596 - +1.0
3,562,596 - +0.2
3,562,596 - -0.8
3,562,596 - +0.2
3,562,596 - -0.2
3,562,596 - -2.2
3,562,596 - +1.0
3,562,596 - -0.4
3,562,600 + +1.2
3,562,600 + -0.9
3,562,703 + +0.2
3,562,703 + -1.0
3,562,704 - -0.2
3,562,704 - +0.0
3,562,717 + +0.0
3,562,717 + +0.3
3,562,717 + -0.7
3,562,717 + -0.3
3,562,717 + -1.0
3,562,717 + -1.1
3,562,717 + -0.3
3,562,717 + +0.5
3,562,717 + -0.7
3,562,717 + +0.8
3,562,717 + -0.8
3,562,717 + +1.4
3,562,717 + +1.0
3,562,717 + +0.1
3,562,717 + -1.1
3,562,717 + -0.2
3,562,718 - +0.1
3,562,718 - -0.3
3,563,519 + OH686_17065 0.71 +0.7
3,563,520 - OH686_17065 0.71 -1.6
3,563,520 - OH686_17065 0.71 -1.7

Or see this region's nucleotide sequence