Strain Fitness in Pseudomonas sp. S08-1 around OH686_14785

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14780 and OH686_14785 are separated by 231 nucleotidesOH686_14785 and OH686_14790 are separated by 8 nucleotidesOH686_14790 and OH686_14795 are separated by 126 nucleotides OH686_14780: OH686_14780 - HD-GYP domain, at 3,106,457 to 3,107,701 _14780 OH686_14785: OH686_14785 - hypothetical protein, at 3,107,933 to 3,108,100 _14785 OH686_14790: OH686_14790 - hypothetical protein, at 3,108,109 to 3,108,939 _14790 OH686_14795: OH686_14795 - hypothetical protein, at 3,109,066 to 3,110,169 _14795 Position (kb) 3107 3108 3109Strain fitness (log2 ratio) -2 -1 0 1 2at 3106.940 kb on + strand, within OH686_14780at 3106.940 kb on + strand, within OH686_14780at 3106.940 kb on + strand, within OH686_14780at 3106.940 kb on + strand, within OH686_14780at 3106.940 kb on + strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.941 kb on - strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.946 kb on + strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3106.947 kb on - strand, within OH686_14780at 3107.082 kb on + strand, within OH686_14780at 3107.082 kb on + strand, within OH686_14780at 3107.082 kb on + strand, within OH686_14780at 3107.083 kb on - strand, within OH686_14780at 3107.083 kb on - strand, within OH686_14780at 3107.083 kb on - strand, within OH686_14780at 3107.303 kb on + strand, within OH686_14780at 3107.303 kb on + strand, within OH686_14780at 3107.303 kb on + strand, within OH686_14780at 3107.303 kb on + strand, within OH686_14780at 3107.304 kb on - strand, within OH686_14780at 3107.304 kb on - strand, within OH686_14780at 3107.304 kb on - strand, within OH686_14780at 3107.330 kb on + strand, within OH686_14780at 3107.330 kb on + strand, within OH686_14780at 3107.330 kb on + strand, within OH686_14780at 3107.330 kb on + strand, within OH686_14780at 3107.331 kb on - strand, within OH686_14780at 3107.331 kb on - strand, within OH686_14780at 3107.331 kb on - strand, within OH686_14780at 3107.331 kb on - strand, within OH686_14780at 3107.403 kb on + strand, within OH686_14780at 3107.404 kb on - strand, within OH686_14780at 3107.404 kb on - strand, within OH686_14780at 3107.404 kb on - strand, within OH686_14780at 3107.404 kb on - strand, within OH686_14780at 3107.436 kb on - strand, within OH686_14780at 3107.436 kb on - strand, within OH686_14780at 3107.607 kb on + strandat 3107.722 kb on + strandat 3107.722 kb on + strandat 3107.722 kb on + strandat 3107.722 kb on + strandat 3107.722 kb on + strandat 3107.722 kb on + strandat 3107.723 kb on - strandat 3107.723 kb on - strandat 3107.723 kb on - strandat 3107.723 kb on - strandat 3107.907 kb on - strandat 3107.907 kb on - strandat 3107.907 kb on - strandat 3107.944 kb on - strandat 3107.988 kb on + strand, within OH686_14785at 3107.988 kb on + strand, within OH686_14785at 3107.988 kb on + strand, within OH686_14785at 3107.988 kb on + strand, within OH686_14785at 3107.988 kb on + strand, within OH686_14785at 3107.988 kb on + strand, within OH686_14785at 3107.989 kb on - strand, within OH686_14785at 3107.989 kb on - strand, within OH686_14785at 3107.989 kb on - strand, within OH686_14785at 3108.014 kb on - strand, within OH686_14785at 3108.098 kb on + strandat 3108.098 kb on + strandat 3108.098 kb on + strandat 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.214 kb on + strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.215 kb on - strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.223 kb on + strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.224 kb on - strand, within OH686_14790at 3108.235 kb on + strand, within OH686_14790at 3108.236 kb on - strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.679 kb on + strand, within OH686_14790at 3108.680 kb on - strand, within OH686_14790at 3108.680 kb on - strand, within OH686_14790at 3108.734 kb on - strand, within OH686_14790at 3108.739 kb on + strand, within OH686_14790at 3108.739 kb on + strand, within OH686_14790at 3108.739 kb on + strand, within OH686_14790at 3108.739 kb on + strand, within OH686_14790at 3108.740 kb on - strand, within OH686_14790at 3108.740 kb on - strand, within OH686_14790at 3108.740 kb on - strand, within OH686_14790at 3108.740 kb on - strand, within OH686_14790at 3109.037 kb on + strandat 3109.038 kb on - strandat 3109.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,106,940 + OH686_14780 0.39 -0.7
3,106,940 + OH686_14780 0.39 +0.1
3,106,940 + OH686_14780 0.39 +0.7
3,106,940 + OH686_14780 0.39 +1.1
3,106,940 + OH686_14780 0.39 -0.9
3,106,941 - OH686_14780 0.39 -0.3
3,106,941 - OH686_14780 0.39 +0.3
3,106,941 - OH686_14780 0.39 -0.5
3,106,941 - OH686_14780 0.39 -0.5
3,106,941 - OH686_14780 0.39 -0.3
3,106,941 - OH686_14780 0.39 -0.9
3,106,946 + OH686_14780 0.39 -0.8
3,106,946 + OH686_14780 0.39 -0.5
3,106,946 + OH686_14780 0.39 +1.0
3,106,946 + OH686_14780 0.39 +0.1
3,106,946 + OH686_14780 0.39 +0.6
3,106,946 + OH686_14780 0.39 -1.6
3,106,946 + OH686_14780 0.39 +0.2
3,106,946 + OH686_14780 0.39 -1.2
3,106,946 + OH686_14780 0.39 +0.7
3,106,946 + OH686_14780 0.39 -0.1
3,106,946 + OH686_14780 0.39 +1.7
3,106,946 + OH686_14780 0.39 -0.7
3,106,946 + OH686_14780 0.39 +0.7
3,106,946 + OH686_14780 0.39 +0.8
3,106,946 + OH686_14780 0.39 -0.1
3,106,946 + OH686_14780 0.39 +0.0
3,106,946 + OH686_14780 0.39 +0.1
3,106,946 + OH686_14780 0.39 +0.0
3,106,946 + OH686_14780 0.39 +0.6
3,106,946 + OH686_14780 0.39 +0.4
3,106,946 + OH686_14780 0.39 -1.9
3,106,946 + OH686_14780 0.39 -1.1
3,106,946 + OH686_14780 0.39 +0.4
3,106,946 + OH686_14780 0.39 -0.4
3,106,946 + OH686_14780 0.39 +0.4
3,106,946 + OH686_14780 0.39 +0.5
3,106,946 + OH686_14780 0.39 -0.2
3,106,946 + OH686_14780 0.39 -0.1
3,106,946 + OH686_14780 0.39 -0.3
3,106,946 + OH686_14780 0.39 +0.1
3,106,946 + OH686_14780 0.39 +0.2
3,106,946 + OH686_14780 0.39 +0.9
3,106,946 + OH686_14780 0.39 +0.3
3,106,946 + OH686_14780 0.39 +0.6
3,106,946 + OH686_14780 0.39 -0.8
3,106,946 + OH686_14780 0.39 -0.2
3,106,946 + OH686_14780 0.39 +1.1
3,106,947 - OH686_14780 0.39 +0.4
3,106,947 - OH686_14780 0.39 +0.1
3,106,947 - OH686_14780 0.39 +0.4
3,106,947 - OH686_14780 0.39 -0.1
3,106,947 - OH686_14780 0.39 -0.6
3,106,947 - OH686_14780 0.39 -0.1
3,106,947 - OH686_14780 0.39 +0.5
3,106,947 - OH686_14780 0.39 -0.4
3,106,947 - OH686_14780 0.39 -0.6
3,106,947 - OH686_14780 0.39 -1.1
3,106,947 - OH686_14780 0.39 +1.3
3,106,947 - OH686_14780 0.39 -0.7
3,106,947 - OH686_14780 0.39 -0.1
3,106,947 - OH686_14780 0.39 +0.2
3,106,947 - OH686_14780 0.39 -0.8
3,106,947 - OH686_14780 0.39 -1.0
3,106,947 - OH686_14780 0.39 +0.7
3,106,947 - OH686_14780 0.39 +0.8
3,106,947 - OH686_14780 0.39 +0.4
3,106,947 - OH686_14780 0.39 +0.9
3,106,947 - OH686_14780 0.39 +0.0
3,106,947 - OH686_14780 0.39 -0.3
3,106,947 - OH686_14780 0.39 -0.1
3,106,947 - OH686_14780 0.39 -0.4
3,106,947 - OH686_14780 0.39 +0.9
3,106,947 - OH686_14780 0.39 +0.6
3,106,947 - OH686_14780 0.39 -0.6
3,107,082 + OH686_14780 0.50 -1.1
3,107,082 + OH686_14780 0.50 +1.8
3,107,082 + OH686_14780 0.50 +0.9
3,107,083 - OH686_14780 0.50 +0.1
3,107,083 - OH686_14780 0.50 +0.2
3,107,083 - OH686_14780 0.50 +0.2
3,107,303 + OH686_14780 0.68 +0.1
3,107,303 + OH686_14780 0.68 -1.1
3,107,303 + OH686_14780 0.68 +1.3
3,107,303 + OH686_14780 0.68 -0.2
3,107,304 - OH686_14780 0.68 -0.1
3,107,304 - OH686_14780 0.68 +0.2
3,107,304 - OH686_14780 0.68 +1.0
3,107,330 + OH686_14780 0.70 +0.2
3,107,330 + OH686_14780 0.70 -0.4
3,107,330 + OH686_14780 0.70 -0.2
3,107,330 + OH686_14780 0.70 +0.3
3,107,331 - OH686_14780 0.70 +1.0
3,107,331 - OH686_14780 0.70 -0.1
3,107,331 - OH686_14780 0.70 -0.0
3,107,331 - OH686_14780 0.70 -0.0
3,107,403 + OH686_14780 0.76 +0.9
3,107,404 - OH686_14780 0.76 +0.3
3,107,404 - OH686_14780 0.76 +0.2
3,107,404 - OH686_14780 0.76 +1.1
3,107,404 - OH686_14780 0.76 -2.1
3,107,436 - OH686_14780 0.79 -0.2
3,107,436 - OH686_14780 0.79 +0.9
3,107,607 + -0.4
3,107,722 + +1.0
3,107,722 + -0.3
3,107,722 + +0.3
3,107,722 + +0.6
3,107,722 + -1.4
3,107,722 + -1.4
3,107,723 - +0.2
3,107,723 - -0.7
3,107,723 - -0.9
3,107,723 - -0.5
3,107,907 - +0.8
3,107,907 - -0.0
3,107,907 - +0.3
3,107,944 - -1.4
3,107,988 + OH686_14785 0.33 -1.4
3,107,988 + OH686_14785 0.33 +0.1
3,107,988 + OH686_14785 0.33 -0.3
3,107,988 + OH686_14785 0.33 +1.0
3,107,988 + OH686_14785 0.33 -0.0
3,107,988 + OH686_14785 0.33 +1.3
3,107,989 - OH686_14785 0.33 -1.2
3,107,989 - OH686_14785 0.33 -0.3
3,107,989 - OH686_14785 0.33 -0.0
3,108,014 - OH686_14785 0.48 -0.6
3,108,098 + -0.4
3,108,098 + +1.3
3,108,098 + +0.6
3,108,214 + OH686_14790 0.13 +0.3
3,108,214 + OH686_14790 0.13 -0.1
3,108,214 + OH686_14790 0.13 +0.9
3,108,214 + OH686_14790 0.13 -1.3
3,108,214 + OH686_14790 0.13 -0.1
3,108,214 + OH686_14790 0.13 +0.6
3,108,214 + OH686_14790 0.13 -2.2
3,108,214 + OH686_14790 0.13 -0.1
3,108,214 + OH686_14790 0.13 -0.4
3,108,214 + OH686_14790 0.13 -0.7
3,108,214 + OH686_14790 0.13 -0.6
3,108,215 - OH686_14790 0.13 -0.8
3,108,215 - OH686_14790 0.13 +0.0
3,108,215 - OH686_14790 0.13 -1.2
3,108,215 - OH686_14790 0.13 -0.1
3,108,215 - OH686_14790 0.13 +0.2
3,108,215 - OH686_14790 0.13 -0.3
3,108,215 - OH686_14790 0.13 -0.6
3,108,215 - OH686_14790 0.13 +0.2
3,108,215 - OH686_14790 0.13 +0.6
3,108,215 - OH686_14790 0.13 -2.1
3,108,215 - OH686_14790 0.13 -0.3
3,108,215 - OH686_14790 0.13 +0.1
3,108,215 - OH686_14790 0.13 -0.3
3,108,215 - OH686_14790 0.13 +0.0
3,108,215 - OH686_14790 0.13 -0.6
3,108,223 + OH686_14790 0.14 -0.7
3,108,223 + OH686_14790 0.14 -0.6
3,108,223 + OH686_14790 0.14 -1.7
3,108,223 + OH686_14790 0.14 -0.1
3,108,223 + OH686_14790 0.14 +0.2
3,108,223 + OH686_14790 0.14 -1.3
3,108,223 + OH686_14790 0.14 +0.2
3,108,223 + OH686_14790 0.14 +0.3
3,108,223 + OH686_14790 0.14 -0.1
3,108,224 - OH686_14790 0.14 +0.2
3,108,224 - OH686_14790 0.14 +0.3
3,108,224 - OH686_14790 0.14 -0.7
3,108,224 - OH686_14790 0.14 +0.0
3,108,224 - OH686_14790 0.14 -0.3
3,108,224 - OH686_14790 0.14 +0.6
3,108,224 - OH686_14790 0.14 -0.2
3,108,224 - OH686_14790 0.14 -0.1
3,108,224 - OH686_14790 0.14 +0.4
3,108,235 + OH686_14790 0.15 +0.3
3,108,236 - OH686_14790 0.15 -0.8
3,108,679 + OH686_14790 0.69 +0.3
3,108,679 + OH686_14790 0.69 +0.0
3,108,679 + OH686_14790 0.69 +0.9
3,108,679 + OH686_14790 0.69 +0.2
3,108,679 + OH686_14790 0.69 +0.4
3,108,679 + OH686_14790 0.69 +0.3
3,108,679 + OH686_14790 0.69 +0.4
3,108,679 + OH686_14790 0.69 +0.3
3,108,680 - OH686_14790 0.69 -1.1
3,108,680 - OH686_14790 0.69 +1.1
3,108,734 - OH686_14790 0.75 -0.6
3,108,739 + OH686_14790 0.76 -1.8
3,108,739 + OH686_14790 0.76 -1.3
3,108,739 + OH686_14790 0.76 +0.8
3,108,739 + OH686_14790 0.76 -0.6
3,108,740 - OH686_14790 0.76 +0.7
3,108,740 - OH686_14790 0.76 -0.0
3,108,740 - OH686_14790 0.76 +0.8
3,108,740 - OH686_14790 0.76 -1.1
3,109,037 + +0.3
3,109,038 - +0.5
3,109,072 + -0.2

Or see this region's nucleotide sequence