Strain Fitness in Pseudomonas sp. S08-1 around OH686_03645

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03640 and OH686_03645 are separated by 108 nucleotidesOH686_03645 and OH686_03650 are separated by 92 nucleotides OH686_03640: OH686_03640 - ATP-dependent Clp protease, ATP-binding subunit ClpX, at 754,556 to 755,836 _03640 OH686_03645: OH686_03645 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 755,945 to 756,586 _03645 OH686_03650: OH686_03650 - trigger factor, at 756,679 to 757,989 _03650 Position (kb) 755 756 757Strain fitness (log2 ratio) -1 0 1at 755.289 kb on + strand, within OH686_03640at 755.315 kb on + strand, within OH686_03640at 755.315 kb on + strand, within OH686_03640at 755.316 kb on - strand, within OH686_03640at 755.316 kb on - strand, within OH686_03640at 755.322 kb on + strand, within OH686_03640at 755.604 kb on + strand, within OH686_03640at 755.850 kb on + strandat 756.245 kb on - strand, within OH686_03645at 756.352 kb on - strand, within OH686_03645at 756.396 kb on - strand, within OH686_03645at 756.605 kb on - strandat 756.605 kb on - strandat 756.605 kb on - strandat 756.607 kb on + strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.766 kb on - strandat 756.766 kb on - strandat 756.770 kb on - strandat 756.770 kb on - strandat 756.827 kb on + strand, within OH686_03650at 756.827 kb on + strand, within OH686_03650at 756.827 kb on + strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.830 kb on + strand, within OH686_03650at 756.830 kb on + strand, within OH686_03650at 756.860 kb on + strand, within OH686_03650at 757.120 kb on + strand, within OH686_03650at 757.121 kb on - strand, within OH686_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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755,289 + OH686_03640 0.57 +0.1
755,315 + OH686_03640 0.59 +0.1
755,315 + OH686_03640 0.59 -0.6
755,316 - OH686_03640 0.59 -1.1
755,316 - OH686_03640 0.59 -0.7
755,322 + OH686_03640 0.60 -0.5
755,604 + OH686_03640 0.82 -0.2
755,850 + -0.2
756,245 - OH686_03645 0.47 +0.1
756,352 - OH686_03645 0.63 +0.1
756,396 - OH686_03645 0.70 +0.1
756,605 - -1.1
756,605 - +0.1
756,605 - -0.2
756,607 + +0.1
756,608 - -0.1
756,608 - +0.2
756,608 - -0.1
756,608 - -0.3
756,630 - +1.4
756,630 - +0.3
756,630 - +0.2
756,630 - -0.1
756,630 - +0.2
756,652 - -0.4
756,652 - +0.9
756,652 - -0.7
756,652 - -0.7
756,652 - +0.1
756,652 - -0.5
756,652 - -1.2
756,766 - -0.0
756,766 - -0.3
756,770 - +0.1
756,770 - +1.2
756,827 + OH686_03650 0.11 -1.6
756,827 + OH686_03650 0.11 +0.1
756,827 + OH686_03650 0.11 -0.1
756,828 - OH686_03650 0.11 -1.2
756,828 - OH686_03650 0.11 +0.3
756,828 - OH686_03650 0.11 +0.5
756,828 - OH686_03650 0.11 +0.6
756,828 - OH686_03650 0.11 -0.7
756,828 - OH686_03650 0.11 +1.4
756,828 - OH686_03650 0.11 +0.4
756,828 - OH686_03650 0.11 -0.4
756,830 + OH686_03650 0.12 +0.1
756,830 + OH686_03650 0.12 +0.1
756,860 + OH686_03650 0.14 -0.2
757,120 + OH686_03650 0.34 -0.8
757,121 - OH686_03650 0.34 +1.1

Or see this region's nucleotide sequence