Strain Fitness in Pseudomonas sp. S08-1 around OH686_01015

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01010 and OH686_01015 are separated by 159 nucleotidesOH686_01015 and OH686_01020 are separated by 198 nucleotides OH686_01010: OH686_01010 - Multidrug efflux system, membrane fusion component, at 211,146 to 212,387 _01010 OH686_01015: OH686_01015 - Transcriptional regulator MexT, at 212,547 to 213,464 _01015 OH686_01020: OH686_01020 - Alcohol dehydrogenase, zinc-containing, at 213,663 to 214,685 _01020 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.663 kb on + strand, within OH686_01010at 211.663 kb on + strand, within OH686_01010at 211.664 kb on - strand, within OH686_01010at 211.664 kb on - strand, within OH686_01010at 211.717 kb on + strand, within OH686_01010at 211.717 kb on + strand, within OH686_01010at 211.717 kb on + strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.718 kb on - strand, within OH686_01010at 211.750 kb on + strand, within OH686_01010at 211.751 kb on - strand, within OH686_01010at 211.756 kb on + strand, within OH686_01010at 211.756 kb on + strand, within OH686_01010at 211.757 kb on - strand, within OH686_01010at 211.757 kb on - strand, within OH686_01010at 212.132 kb on + strand, within OH686_01010at 212.167 kb on + strand, within OH686_01010at 212.167 kb on + strand, within OH686_01010at 212.168 kb on - strand, within OH686_01010at 212.168 kb on - strand, within OH686_01010at 212.369 kb on + strandat 212.369 kb on + strandat 212.370 kb on - strandat 212.370 kb on - strandat 212.370 kb on - strandat 212.473 kb on + strandat 212.474 kb on - strandat 212.506 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.510 kb on - strandat 212.510 kb on - strandat 212.510 kb on - strandat 212.510 kb on - strandat 212.510 kb on - strandat 212.510 kb on - strandat 212.722 kb on + strand, within OH686_01015at 212.722 kb on + strand, within OH686_01015at 212.722 kb on + strand, within OH686_01015at 212.723 kb on - strand, within OH686_01015at 212.841 kb on - strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 212.998 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.048 kb on + strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.049 kb on - strand, within OH686_01015at 213.052 kb on + strand, within OH686_01015at 213.052 kb on + strand, within OH686_01015at 213.052 kb on + strand, within OH686_01015at 213.052 kb on + strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.053 kb on - strand, within OH686_01015at 213.072 kb on + strand, within OH686_01015at 213.072 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.074 kb on + strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.075 kb on - strand, within OH686_01015at 213.078 kb on + strand, within OH686_01015at 213.404 kb on + strandat 213.404 kb on + strandat 213.405 kb on - strandat 213.405 kb on - strandat 213.405 kb on - strandat 213.405 kb on - strandat 213.417 kb on + strandat 213.417 kb on + strandat 213.511 kb on + strandat 213.511 kb on + strandat 213.512 kb on - strandat 213.512 kb on - strandat 213.512 kb on - strandat 213.536 kb on - strandat 213.615 kb on + strandat 213.615 kb on + strandat 213.625 kb on + strandat 213.625 kb on + strandat 213.625 kb on + strandat 213.625 kb on + strandat 213.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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211,663 + OH686_01010 0.42 -0.0
211,663 + OH686_01010 0.42 +0.1
211,664 - OH686_01010 0.42 +1.8
211,664 - OH686_01010 0.42 -1.6
211,717 + OH686_01010 0.46 -0.6
211,717 + OH686_01010 0.46 -1.1
211,717 + OH686_01010 0.46 -0.1
211,718 - OH686_01010 0.46 +0.1
211,718 - OH686_01010 0.46 +0.6
211,718 - OH686_01010 0.46 +1.0
211,718 - OH686_01010 0.46 -0.5
211,718 - OH686_01010 0.46 -1.2
211,718 - OH686_01010 0.46 +1.0
211,750 + OH686_01010 0.49 -0.3
211,751 - OH686_01010 0.49 +0.4
211,756 + OH686_01010 0.49 -0.7
211,756 + OH686_01010 0.49 +0.8
211,757 - OH686_01010 0.49 +0.1
211,757 - OH686_01010 0.49 -0.1
212,132 + OH686_01010 0.79 -0.2
212,167 + OH686_01010 0.82 -0.2
212,167 + OH686_01010 0.82 +0.2
212,168 - OH686_01010 0.82 +0.2
212,168 - OH686_01010 0.82 -1.0
212,369 + +0.9
212,369 + +0.3
212,370 - +2.5
212,370 - -0.4
212,370 - +0.5
212,473 + -0.2
212,474 - -1.0
212,506 + -1.0
212,509 + +0.1
212,509 + -0.9
212,510 - -0.1
212,510 - -0.4
212,510 - +0.0
212,510 - -0.1
212,510 - +1.6
212,510 - -0.2
212,722 + OH686_01015 0.19 +0.4
212,722 + OH686_01015 0.19 -0.4
212,722 + OH686_01015 0.19 +1.6
212,723 - OH686_01015 0.19 -0.8
212,841 - OH686_01015 0.32 -0.4
212,998 + OH686_01015 0.49 -0.2
212,998 + OH686_01015 0.49 -0.4
212,998 + OH686_01015 0.49 -1.0
212,998 + OH686_01015 0.49 -0.9
212,998 + OH686_01015 0.49 +0.2
212,998 + OH686_01015 0.49 -0.4
212,998 + OH686_01015 0.49 -0.4
213,048 + OH686_01015 0.55 -1.1
213,048 + OH686_01015 0.55 +0.6
213,048 + OH686_01015 0.55 -0.1
213,048 + OH686_01015 0.55 -0.2
213,048 + OH686_01015 0.55 -0.7
213,048 + OH686_01015 0.55 -0.1
213,048 + OH686_01015 0.55 -0.0
213,049 - OH686_01015 0.55 +0.3
213,049 - OH686_01015 0.55 +0.5
213,049 - OH686_01015 0.55 -0.4
213,049 - OH686_01015 0.55 +0.7
213,049 - OH686_01015 0.55 -0.3
213,049 - OH686_01015 0.55 -0.6
213,049 - OH686_01015 0.55 +1.4
213,049 - OH686_01015 0.55 -1.5
213,052 + OH686_01015 0.55 -0.8
213,052 + OH686_01015 0.55 -0.7
213,052 + OH686_01015 0.55 -0.4
213,052 + OH686_01015 0.55 +0.1
213,053 - OH686_01015 0.55 -0.2
213,053 - OH686_01015 0.55 -0.8
213,053 - OH686_01015 0.55 -0.6
213,053 - OH686_01015 0.55 +0.6
213,053 - OH686_01015 0.55 -0.8
213,053 - OH686_01015 0.55 +0.5
213,053 - OH686_01015 0.55 -0.5
213,053 - OH686_01015 0.55 -1.3
213,053 - OH686_01015 0.55 -0.6
213,072 + OH686_01015 0.57 -0.2
213,072 + OH686_01015 0.57 -1.0
213,074 + OH686_01015 0.57 -0.1
213,074 + OH686_01015 0.57 -0.5
213,074 + OH686_01015 0.57 +1.9
213,074 + OH686_01015 0.57 -0.2
213,074 + OH686_01015 0.57 -0.5
213,074 + OH686_01015 0.57 +0.4
213,074 + OH686_01015 0.57 -1.3
213,074 + OH686_01015 0.57 +0.3
213,074 + OH686_01015 0.57 -0.4
213,074 + OH686_01015 0.57 -0.3
213,074 + OH686_01015 0.57 -0.3
213,074 + OH686_01015 0.57 +0.6
213,074 + OH686_01015 0.57 +0.3
213,074 + OH686_01015 0.57 -1.3
213,074 + OH686_01015 0.57 +0.4
213,074 + OH686_01015 0.57 +0.4
213,074 + OH686_01015 0.57 +0.8
213,074 + OH686_01015 0.57 +0.2
213,074 + OH686_01015 0.57 -0.5
213,074 + OH686_01015 0.57 -1.5
213,074 + OH686_01015 0.57 -0.0
213,074 + OH686_01015 0.57 -0.4
213,074 + OH686_01015 0.57 -0.5
213,074 + OH686_01015 0.57 -0.7
213,074 + OH686_01015 0.57 -1.2
213,074 + OH686_01015 0.57 +0.3
213,074 + OH686_01015 0.57 -0.5
213,074 + OH686_01015 0.57 -1.2
213,074 + OH686_01015 0.57 +1.7
213,074 + OH686_01015 0.57 +0.4
213,074 + OH686_01015 0.57 +0.0
213,074 + OH686_01015 0.57 -0.3
213,074 + OH686_01015 0.57 -0.2
213,074 + OH686_01015 0.57 -0.5
213,075 - OH686_01015 0.58 +0.3
213,075 - OH686_01015 0.58 -0.4
213,075 - OH686_01015 0.58 -0.3
213,075 - OH686_01015 0.58 +1.6
213,075 - OH686_01015 0.58 -2.4
213,075 - OH686_01015 0.58 -0.7
213,075 - OH686_01015 0.58 -0.5
213,075 - OH686_01015 0.58 -0.6
213,075 - OH686_01015 0.58 +0.2
213,075 - OH686_01015 0.58 -0.1
213,075 - OH686_01015 0.58 +0.2
213,075 - OH686_01015 0.58 +0.3
213,075 - OH686_01015 0.58 -0.9
213,075 - OH686_01015 0.58 -0.4
213,075 - OH686_01015 0.58 +0.1
213,075 - OH686_01015 0.58 -0.8
213,075 - OH686_01015 0.58 +1.2
213,075 - OH686_01015 0.58 -1.0
213,075 - OH686_01015 0.58 +0.3
213,075 - OH686_01015 0.58 -0.0
213,075 - OH686_01015 0.58 +0.9
213,075 - OH686_01015 0.58 +0.2
213,075 - OH686_01015 0.58 -0.6
213,075 - OH686_01015 0.58 +0.1
213,075 - OH686_01015 0.58 +1.3
213,075 - OH686_01015 0.58 -0.5
213,075 - OH686_01015 0.58 +0.1
213,078 + OH686_01015 0.58 -0.5
213,404 + -0.4
213,404 + +1.3
213,405 - -0.4
213,405 - -0.3
213,405 - +0.0
213,405 - -0.7
213,417 + +0.8
213,417 + +0.9
213,511 + +0.9
213,511 + +0.4
213,512 - +1.7
213,512 - -1.6
213,512 - -0.6
213,536 - +1.1
213,615 + -0.9
213,615 + +0.2
213,625 + +0.1
213,625 + -1.3
213,625 + -1.0
213,625 + -1.3
213,640 + +0.1

Or see this region's nucleotide sequence