Strain Fitness in Pseudomonas simiae WCS417 around PS417_26430

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26415 and PS417_26420 are separated by 282 nucleotidesPS417_26420 and PS417_26425 are separated by 61 nucleotidesPS417_26425 and PS417_26430 are separated by 29 nucleotidesPS417_26430 and PS417_26435 are separated by 17 nucleotides PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021 _26415 PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639 _26420 PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928 _26425 PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194 _26435 Position (kb) 5714 5715 5716 5717Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5714.092 kb on - strandat 5714.154 kb on + strandat 5714.154 kb on + strandat 5714.155 kb on - strandat 5714.238 kb on - strandat 5714.404 kb on + strand, within PS417_26420at 5714.405 kb on - strand, within PS417_26420at 5715.000 kb on + strandat 5715.073 kb on + strandat 5715.073 kb on + strandat 5715.351 kb on + strand, within PS417_26430at 5716.141 kb on - strandat 5716.141 kb on - strandat 5716.141 kb on - strandat 5716.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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5,714,092 - -0.0
5,714,154 + +0.2
5,714,154 + -0.8
5,714,155 - +0.4
5,714,238 - +0.3
5,714,404 + PS417_26420 0.30 +0.6
5,714,405 - PS417_26420 0.30 +0.3
5,715,000 + -3.1
5,715,073 + -0.9
5,715,073 + -2.7
5,715,351 + PS417_26430 0.34 -2.4
5,716,141 - -1.1
5,716,141 - -0.7
5,716,141 - -1.4
5,716,156 + -5.5

Or see this region's nucleotide sequence