Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26415 and PS417_26420 are separated by 282 nucleotides PS417_26420 and PS417_26425 are separated by 61 nucleotides PS417_26425 and PS417_26430 are separated by 29 nucleotides PS417_26430 and PS417_26435 are separated by 17 nucleotides
PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021
_26415
PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639
_26420
PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928
_26425
PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121
_26430
PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194
_26435
Position (kb)
5714
5715
5716
5717 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 5714.092 kb on - strand at 5714.154 kb on + strand at 5714.154 kb on + strand at 5714.155 kb on - strand at 5714.238 kb on - strand at 5714.404 kb on + strand, within PS417_26420 at 5714.405 kb on - strand, within PS417_26420 at 5715.000 kb on + strand at 5715.073 kb on + strand at 5715.073 kb on + strand at 5715.351 kb on + strand, within PS417_26430 at 5716.141 kb on - strand at 5716.141 kb on - strand at 5716.141 kb on - strand at 5716.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 5,714,092 - -0.0 5,714,154 + +0.2 5,714,154 + -0.8 5,714,155 - +0.4 5,714,238 - +0.3 5,714,404 + PS417_26420 0.30 +0.6 5,714,405 - PS417_26420 0.30 +0.3 5,715,000 + -3.1 5,715,073 + -0.9 5,715,073 + -2.7 5,715,351 + PS417_26430 0.34 -2.4 5,716,141 - -1.1 5,716,141 - -0.7 5,716,141 - -1.4 5,716,156 + -5.5
Or see this region's nucleotide sequence