Strain Fitness in Pseudomonas simiae WCS417 around PS417_26415

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26410 and PS417_26415 are separated by 54 nucleotidesPS417_26415 and PS417_26420 are separated by 282 nucleotidesPS417_26420 and PS417_26425 are separated by 61 nucleotidesPS417_26425 and PS417_26430 are separated by 29 nucleotides PS417_26410: PS417_26410 - alginate lyase, at 5,712,237 to 5,712,902 _26410 PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021 _26415 PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639 _26420 PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928 _26425 PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 Position (kb) 5712 5713 5714 5715Strain fitness (log2 ratio) -3 -2 -1 0 1at 5712.026 kb on + strandat 5712.027 kb on - strandat 5712.154 kb on + strandat 5712.176 kb on + strandat 5712.176 kb on + strandat 5712.176 kb on + strandat 5712.176 kb on + strandat 5712.177 kb on - strandat 5712.221 kb on + strandat 5712.221 kb on + strandat 5712.333 kb on + strand, within PS417_26410at 5712.406 kb on - strand, within PS417_26410at 5712.452 kb on + strand, within PS417_26410at 5712.453 kb on - strand, within PS417_26410at 5712.552 kb on + strand, within PS417_26410at 5712.552 kb on + strand, within PS417_26410at 5712.553 kb on - strand, within PS417_26410at 5712.585 kb on + strand, within PS417_26410at 5712.586 kb on - strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.708 kb on + strand, within PS417_26410at 5712.709 kb on - strand, within PS417_26410at 5712.709 kb on - strand, within PS417_26410at 5712.747 kb on + strand, within PS417_26410at 5712.748 kb on - strand, within PS417_26410at 5712.808 kb on - strand, within PS417_26410at 5712.808 kb on - strand, within PS417_26410at 5712.825 kb on + strand, within PS417_26410at 5712.825 kb on + strand, within PS417_26410at 5712.826 kb on - strand, within PS417_26410at 5712.826 kb on - strand, within PS417_26410at 5712.826 kb on - strand, within PS417_26410at 5712.826 kb on - strand, within PS417_26410at 5712.826 kb on - strand, within PS417_26410at 5712.905 kb on - strandat 5714.092 kb on - strandat 5714.154 kb on + strandat 5714.154 kb on + strandat 5714.155 kb on - strandat 5714.238 kb on - strandat 5714.404 kb on + strand, within PS417_26420at 5714.405 kb on - strand, within PS417_26420at 5715.000 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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5,712,026 + +0.3
5,712,027 - +0.9
5,712,154 + +0.3
5,712,176 + +0.1
5,712,176 + +0.5
5,712,176 + +0.1
5,712,176 + +0.1
5,712,177 - -1.1
5,712,221 + -0.9
5,712,221 + -0.2
5,712,333 + PS417_26410 0.14 -0.0
5,712,406 - PS417_26410 0.25 +0.5
5,712,452 + PS417_26410 0.32 +0.4
5,712,453 - PS417_26410 0.32 +0.3
5,712,552 + PS417_26410 0.47 -0.3
5,712,552 + PS417_26410 0.47 +0.4
5,712,553 - PS417_26410 0.47 -0.4
5,712,585 + PS417_26410 0.52 -0.0
5,712,586 - PS417_26410 0.52 +0.6
5,712,708 + PS417_26410 0.71 -0.0
5,712,708 + PS417_26410 0.71 +0.1
5,712,708 + PS417_26410 0.71 +0.4
5,712,708 + PS417_26410 0.71 -0.1
5,712,708 + PS417_26410 0.71 -1.4
5,712,708 + PS417_26410 0.71 +1.3
5,712,709 - PS417_26410 0.71 +0.1
5,712,709 - PS417_26410 0.71 +0.3
5,712,747 + PS417_26410 0.77 -0.0
5,712,748 - PS417_26410 0.77 +0.1
5,712,808 - PS417_26410 0.86 +0.1
5,712,808 - PS417_26410 0.86 -0.4
5,712,825 + PS417_26410 0.88 +0.7
5,712,825 + PS417_26410 0.88 +0.1
5,712,826 - PS417_26410 0.88 +0.3
5,712,826 - PS417_26410 0.88 -0.3
5,712,826 - PS417_26410 0.88 -0.2
5,712,826 - PS417_26410 0.88 +1.0
5,712,826 - PS417_26410 0.88 -0.1
5,712,905 - +1.0
5,714,092 - -0.0
5,714,154 + +0.2
5,714,154 + -0.8
5,714,155 - +0.4
5,714,238 - +0.3
5,714,404 + PS417_26420 0.30 +0.6
5,714,405 - PS417_26420 0.30 +0.3
5,715,000 + -3.1

Or see this region's nucleotide sequence