Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23915 and PS417_23920 are separated by 224 nucleotides PS417_23920 and PS417_23925 are separated by 105 nucleotides
PS417_23915: PS417_23915 - pantoate--beta-alanine ligase, at 5,175,340 to 5,176,191
_23915
PS417_23920: PS417_23920 - glucose-6-phosphate isomerase, at 5,176,416 to 5,178,080
_23920
PS417_23925: PS417_23925 - acetyl-CoA synthetase, at 5,178,186 to 5,180,123
_23925
Position (kb) 5176
5177
5178
5179 Strain fitness (log2 ratio) -2
-1
0
1 at 5175.550 kb on + strand, within PS417_23915 at 5175.634 kb on + strand, within PS417_23915 at 5175.797 kb on - strand, within PS417_23915 at 5175.872 kb on + strand, within PS417_23915 at 5176.223 kb on + strand at 5176.276 kb on + strand at 5176.276 kb on + strand at 5176.288 kb on - strand at 5176.288 kb on - strand at 5176.298 kb on + strand at 5176.368 kb on + strand at 5176.379 kb on + strand at 5176.379 kb on + strand at 5176.397 kb on + strand at 5176.939 kb on - strand at 5178.054 kb on + strand at 5178.151 kb on - strand at 5178.255 kb on + strand at 5178.255 kb on + strand at 5178.255 kb on + strand at 5178.256 kb on - strand at 5178.256 kb on - strand at 5178.257 kb on + strand at 5178.258 kb on - strand at 5178.293 kb on + strand at 5178.417 kb on + strand, within PS417_23925 at 5178.417 kb on + strand at 5178.418 kb on - strand, within PS417_23925 at 5178.594 kb on + strand, within PS417_23925 at 5178.594 kb on + strand, within PS417_23925 at 5178.594 kb on + strand, within PS417_23925 at 5178.595 kb on - strand, within PS417_23925 at 5178.595 kb on - strand, within PS417_23925 at 5178.595 kb on - strand, within PS417_23925 at 5178.595 kb on - strand, within PS417_23925 at 5178.705 kb on - strand, within PS417_23925 at 5178.776 kb on + strand at 5178.776 kb on + strand, within PS417_23925 at 5178.776 kb on + strand, within PS417_23925 at 5178.777 kb on - strand, within PS417_23925 at 5178.885 kb on + strand, within PS417_23925 at 5178.885 kb on + strand, within PS417_23925 at 5178.963 kb on + strand at 5178.963 kb on + strand, within PS417_23925 at 5178.964 kb on - strand, within PS417_23925 at 5178.964 kb on - strand, within PS417_23925 at 5178.964 kb on - strand, within PS417_23925 at 5179.047 kb on + strand, within PS417_23925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 5,175,550 + PS417_23915 0.25 -0.3 5,175,634 + PS417_23915 0.35 -0.1 5,175,797 - PS417_23915 0.54 -0.5 5,175,872 + PS417_23915 0.62 -0.0 5,176,223 + +0.3 5,176,276 + -0.1 5,176,276 + -0.1 5,176,288 - +0.7 5,176,288 - +0.3 5,176,298 + -0.1 5,176,368 + -0.1 5,176,379 + +0.4 5,176,379 + +0.5 5,176,397 + +0.7 5,176,939 - +0.3 5,178,054 + -0.1 5,178,151 - +1.6 5,178,255 + -0.9 5,178,255 + -0.1 5,178,255 + -0.6 5,178,256 - -0.8 5,178,256 - +1.3 5,178,257 + -0.5 5,178,258 - -1.1 5,178,293 + +0.7 5,178,417 + PS417_23925 0.12 +0.6 5,178,417 + -2.0 5,178,418 - PS417_23925 0.12 -0.6 5,178,594 + PS417_23925 0.21 +0.0 5,178,594 + PS417_23925 0.21 +0.1 5,178,594 + PS417_23925 0.21 +0.3 5,178,595 - PS417_23925 0.21 +0.1 5,178,595 - PS417_23925 0.21 -0.6 5,178,595 - PS417_23925 0.21 +0.0 5,178,595 - PS417_23925 0.21 +0.5 5,178,705 - PS417_23925 0.27 -0.8 5,178,776 + +0.3 5,178,776 + PS417_23925 0.30 +0.2 5,178,776 + PS417_23925 0.30 -0.5 5,178,777 - PS417_23925 0.30 +0.3 5,178,885 + PS417_23925 0.36 +0.1 5,178,885 + PS417_23925 0.36 -0.4 5,178,963 + +0.9 5,178,963 + PS417_23925 0.40 +0.0 5,178,964 - PS417_23925 0.40 +1.2 5,178,964 - PS417_23925 0.40 -0.2 5,178,964 - PS417_23925 0.40 +0.1 5,179,047 + PS417_23925 0.44 +0.1
Or see this region's nucleotide sequence