Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4452 and Echvi_4453 are separated by 53 nucleotides Echvi_4453 and Echvi_4454 are separated by 424 nucleotides Echvi_4454 and Echvi_4455 are separated by 297 nucleotides
Echvi_4452: Echvi_4452 - SusD family., at 5,328,048 to 5,329,406
_4452
Echvi_4453: Echvi_4453 - hypothetical protein, at 5,329,460 to 5,329,729
_4453
Echvi_4454: Echvi_4454 - hypothetical protein, at 5,330,154 to 5,330,609
_4454
Echvi_4455: Echvi_4455 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 5,330,907 to 5,331,491
_4455
Position (kb) 5330
5331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5329.166 kb on - strand, within Echvi_4452 at 5329.289 kb on - strand at 5329.324 kb on + strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.358 kb on - strand at 5329.439 kb on + strand at 5329.568 kb on + strand, within Echvi_4453 at 5329.609 kb on + strand, within Echvi_4453 at 5329.712 kb on - strand at 5329.784 kb on - strand at 5329.799 kb on + strand at 5329.800 kb on - strand at 5329.812 kb on + strand at 5329.849 kb on + strand at 5329.850 kb on - strand at 5329.850 kb on - strand at 5329.859 kb on - strand at 5329.863 kb on + strand at 5329.864 kb on - strand at 5329.864 kb on - strand at 5329.897 kb on - strand at 5329.921 kb on + strand at 5329.921 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.927 kb on - strand at 5329.927 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.969 kb on - strand at 5329.969 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.070 kb on - strand at 5330.084 kb on + strand at 5330.090 kb on + strand at 5330.090 kb on + strand at 5330.093 kb on + strand at 5330.098 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.112 kb on + strand at 5330.112 kb on + strand at 5330.204 kb on + strand, within Echvi_4454 at 5330.223 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.337 kb on + strand, within Echvi_4454 at 5330.395 kb on - strand, within Echvi_4454 at 5330.579 kb on + strand at 5330.579 kb on + strand at 5330.580 kb on - strand at 5330.582 kb on + strand at 5330.582 kb on + strand at 5330.583 kb on - strand at 5330.583 kb on - strand at 5330.586 kb on + strand at 5330.611 kb on + strand at 5330.611 kb on + strand at 5330.611 kb on + strand at 5330.632 kb on + strand at 5330.633 kb on - strand at 5330.649 kb on - strand at 5330.676 kb on - strand at 5330.676 kb on - strand at 5330.702 kb on - strand at 5330.702 kb on - strand at 5330.760 kb on + strand at 5330.761 kb on - strand at 5330.797 kb on - strand at 5330.812 kb on - strand at 5330.854 kb on - strand at 5330.917 kb on + strand at 5330.918 kb on - strand at 5330.918 kb on - strand at 5330.965 kb on + strand at 5330.966 kb on - strand, within Echvi_4455 at 5330.978 kb on - strand, within Echvi_4455 at 5330.979 kb on + strand, within Echvi_4455 at 5330.979 kb on + strand, within Echvi_4455 at 5330.980 kb on - strand, within Echvi_4455 at 5330.980 kb on - strand, within Echvi_4455 at 5330.998 kb on - strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.072 kb on - strand, within Echvi_4455 at 5331.075 kb on + strand, within Echvi_4455 at 5331.078 kb on - strand, within Echvi_4455 at 5331.078 kb on - strand, within Echvi_4455 at 5331.167 kb on - strand, within Echvi_4455 at 5331.292 kb on + strand, within Echvi_4455 at 5331.292 kb on + strand, within Echvi_4455 at 5331.293 kb on - strand, within Echvi_4455 at 5331.293 kb on - strand, within Echvi_4455 at 5331.336 kb on + strand, within Echvi_4455 at 5331.336 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.394 kb on - strand, within Echvi_4455 at 5331.439 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.447 kb on - strand at 5331.490 kb on - strand at 5331.503 kb on + strand at 5331.523 kb on + strand at 5331.531 kb on - strand at 5331.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 5,329,166 - Echvi_4452 0.82 -0.3 5,329,289 - -0.6 5,329,324 + +0.9 5,329,345 - +0.3 5,329,345 - -0.8 5,329,345 - +1.8 5,329,358 - +0.4 5,329,439 + +1.2 5,329,568 + Echvi_4453 0.40 -0.3 5,329,609 + Echvi_4453 0.55 -0.5 5,329,712 - -2.4 5,329,784 - +0.4 5,329,799 + -1.5 5,329,800 - +0.7 5,329,812 + -0.4 5,329,849 + +2.2 5,329,850 - -3.3 5,329,850 - +0.1 5,329,859 - +0.6 5,329,863 + +0.8 5,329,864 - +0.4 5,329,864 - -0.7 5,329,897 - +1.1 5,329,921 + -0.1 5,329,921 + +0.3 5,329,926 + -0.8 5,329,926 + +0.2 5,329,926 + +0.3 5,329,927 - -1.0 5,329,927 - -0.1 5,329,946 - +0.3 5,329,946 - +0.0 5,329,946 - -1.0 5,329,969 - -0.8 5,329,969 - +1.2 5,330,022 - -2.0 5,330,022 - +0.9 5,330,022 - -1.1 5,330,022 - -0.5 5,330,070 - -1.4 5,330,084 + +0.4 5,330,090 + -0.5 5,330,090 + +0.6 5,330,093 + -0.5 5,330,098 + +1.0 5,330,103 + +2.2 5,330,103 + +1.3 5,330,103 + +0.0 5,330,103 + +0.3 5,330,103 + +0.8 5,330,103 + +1.0 5,330,112 + -0.4 5,330,112 + +0.2 5,330,204 + Echvi_4454 0.11 +2.3 5,330,223 + Echvi_4454 0.15 -1.8 5,330,307 + Echvi_4454 0.34 -1.7 5,330,307 + Echvi_4454 0.34 -0.4 5,330,308 - Echvi_4454 0.34 +0.6 5,330,308 - Echvi_4454 0.34 +0.5 5,330,308 - Echvi_4454 0.34 +1.2 5,330,308 - Echvi_4454 0.34 -1.7 5,330,309 + Echvi_4454 0.34 -0.1 5,330,309 + Echvi_4454 0.34 +0.7 5,330,309 + Echvi_4454 0.34 +0.2 5,330,309 + Echvi_4454 0.34 +0.1 5,330,309 + Echvi_4454 0.34 +0.1 5,330,309 + Echvi_4454 0.34 -0.7 5,330,310 - Echvi_4454 0.34 +0.7 5,330,310 - Echvi_4454 0.34 +1.0 5,330,311 + Echvi_4454 0.34 +0.2 5,330,311 + Echvi_4454 0.34 +1.2 5,330,311 + Echvi_4454 0.34 +1.0 5,330,311 + Echvi_4454 0.34 -0.3 5,330,311 + Echvi_4454 0.34 -0.9 5,330,311 + Echvi_4454 0.34 +1.1 5,330,311 + Echvi_4454 0.34 -1.0 5,330,312 - Echvi_4454 0.35 +0.0 5,330,312 - Echvi_4454 0.35 +0.1 5,330,337 + Echvi_4454 0.40 +0.2 5,330,395 - Echvi_4454 0.53 +0.8 5,330,579 + +1.0 5,330,579 + -0.6 5,330,580 - +0.5 5,330,582 + +0.0 5,330,582 + +1.2 5,330,583 - +0.3 5,330,583 - -0.8 5,330,586 + +0.6 5,330,611 + -0.4 5,330,611 + -0.1 5,330,611 + +0.7 5,330,632 + -0.6 5,330,633 - -1.8 5,330,649 - +0.6 5,330,676 - +0.0 5,330,676 - -1.1 5,330,702 - -1.5 5,330,702 - +1.6 5,330,760 + +0.8 5,330,761 - +1.1 5,330,797 - +0.5 5,330,812 - -0.1 5,330,854 - -0.5 5,330,917 + -3.0 5,330,918 - -0.6 5,330,918 - -0.8 5,330,965 + +1.2 5,330,966 - Echvi_4455 0.10 -0.7 5,330,978 - Echvi_4455 0.12 +1.4 5,330,979 + Echvi_4455 0.12 +0.9 5,330,979 + Echvi_4455 0.12 +0.1 5,330,980 - Echvi_4455 0.12 -0.1 5,330,980 - Echvi_4455 0.12 -1.2 5,330,998 - Echvi_4455 0.16 +0.1 5,331,071 + Echvi_4455 0.28 -0.3 5,331,071 + Echvi_4455 0.28 +1.3 5,331,071 + Echvi_4455 0.28 +0.1 5,331,072 - Echvi_4455 0.28 +0.1 5,331,075 + Echvi_4455 0.29 -0.3 5,331,078 - Echvi_4455 0.29 -0.3 5,331,078 - Echvi_4455 0.29 -1.9 5,331,167 - Echvi_4455 0.44 +1.6 5,331,292 + Echvi_4455 0.66 +0.2 5,331,292 + Echvi_4455 0.66 +1.7 5,331,293 - Echvi_4455 0.66 -0.1 5,331,293 - Echvi_4455 0.66 +1.0 5,331,336 + Echvi_4455 0.73 -2.5 5,331,336 + Echvi_4455 0.73 +0.4 5,331,393 + Echvi_4455 0.83 -0.2 5,331,393 + Echvi_4455 0.83 -0.1 5,331,393 + Echvi_4455 0.83 -0.2 5,331,394 - Echvi_4455 0.83 -1.6 5,331,439 + -0.4 5,331,446 + +0.4 5,331,446 + +0.4 5,331,446 + +1.0 5,331,446 + +0.2 5,331,447 - +1.7 5,331,490 - +0.6 5,331,503 + +1.3 5,331,523 + -1.5 5,331,531 - +1.6 5,331,586 + -0.9
Or see this region's nucleotide sequence