Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0653 and Echvi_0654 are separated by 5 nucleotides Echvi_0654 and Echvi_0655 are separated by 82 nucleotides Echvi_0655 and Echvi_0656 are separated by 74 nucleotides Echvi_0656 and Echvi_0657 are separated by 10 nucleotides
Echvi_0653: Echvi_0653 - Outer membrane protein/protective antigen OMA87, at 736,440 to 739,154
_0653
Echvi_0654: Echvi_0654 - undecaprenyl diphosphate synthase, at 739,160 to 739,897
_0654
Echvi_0655: Echvi_0655 - hypothetical protein, at 739,980 to 740,771
_0655
Echvi_0656: Echvi_0656 - Predicted sugar kinase, at 740,846 to 741,721
_0656
Echvi_0657: Echvi_0657 - hypothetical protein, at 741,732 to 742,397
_0657
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 739.932 kb on - strand at 739.978 kb on - strand at 740.041 kb on + strand at 740.068 kb on + strand, within Echvi_0655 at 740.092 kb on + strand, within Echvi_0655 at 740.093 kb on - strand, within Echvi_0655 at 740.211 kb on + strand, within Echvi_0655 at 740.242 kb on + strand, within Echvi_0655 at 740.243 kb on - strand, within Echvi_0655 at 740.243 kb on - strand, within Echvi_0655 at 740.287 kb on + strand, within Echvi_0655 at 740.353 kb on + strand, within Echvi_0655 at 740.354 kb on - strand, within Echvi_0655 at 740.383 kb on + strand, within Echvi_0655 at 740.411 kb on - strand, within Echvi_0655 at 740.425 kb on + strand, within Echvi_0655 at 740.490 kb on - strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.505 kb on + strand, within Echvi_0655 at 740.506 kb on - strand, within Echvi_0655 at 740.506 kb on - strand, within Echvi_0655 at 740.545 kb on + strand, within Echvi_0655 at 740.546 kb on - strand, within Echvi_0655 at 740.630 kb on + strand, within Echvi_0655 at 740.631 kb on - strand, within Echvi_0655 at 740.631 kb on - strand, within Echvi_0655 at 740.633 kb on + strand, within Echvi_0655 at 740.634 kb on - strand, within Echvi_0655 at 740.634 kb on - strand, within Echvi_0655 at 740.664 kb on + strand, within Echvi_0655 at 740.665 kb on - strand, within Echvi_0655 at 740.665 kb on - strand, within Echvi_0655 at 740.665 kb on - strand, within Echvi_0655 at 740.718 kb on + strand at 740.786 kb on + strand at 740.820 kb on - strand at 740.836 kb on + strand at 740.837 kb on - strand at 741.733 kb on + strand at 741.733 kb on + strand at 741.734 kb on - strand at 741.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 739,932 - -0.1 739,978 - +0.6 740,041 + -2.0 740,068 + Echvi_0655 0.11 +0.0 740,092 + Echvi_0655 0.14 -3.1 740,093 - Echvi_0655 0.14 -1.2 740,211 + Echvi_0655 0.29 -1.2 740,242 + Echvi_0655 0.33 -0.2 740,243 - Echvi_0655 0.33 -1.3 740,243 - Echvi_0655 0.33 -0.8 740,287 + Echvi_0655 0.39 -2.6 740,353 + Echvi_0655 0.47 -1.1 740,354 - Echvi_0655 0.47 -0.6 740,383 + Echvi_0655 0.51 -2.1 740,411 - Echvi_0655 0.54 -0.2 740,425 + Echvi_0655 0.56 -0.6 740,490 - Echvi_0655 0.64 -1.4 740,505 + Echvi_0655 0.66 -2.9 740,505 + Echvi_0655 0.66 -1.5 740,505 + Echvi_0655 0.66 -1.5 740,505 + Echvi_0655 0.66 -0.4 740,505 + Echvi_0655 0.66 -0.5 740,505 + Echvi_0655 0.66 -1.7 740,506 - Echvi_0655 0.66 +0.3 740,506 - Echvi_0655 0.66 -1.2 740,545 + Echvi_0655 0.71 -2.8 740,546 - Echvi_0655 0.71 -0.7 740,630 + Echvi_0655 0.82 -1.5 740,631 - Echvi_0655 0.82 -0.6 740,631 - Echvi_0655 0.82 +0.2 740,633 + Echvi_0655 0.82 +1.2 740,634 - Echvi_0655 0.83 -2.2 740,634 - Echvi_0655 0.83 -0.3 740,664 + Echvi_0655 0.86 -1.8 740,665 - Echvi_0655 0.86 -1.1 740,665 - Echvi_0655 0.86 -1.1 740,665 - Echvi_0655 0.86 -1.5 740,718 + -0.4 740,786 + +0.6 740,820 - +0.7 740,836 + +1.1 740,837 - -0.1 741,733 + -0.2 741,733 + -0.9 741,734 - -0.6 741,738 - +0.8
Or see this region's nucleotide sequence