Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4539 and EX28DRAFT_4540 are separated by 9 nucleotides EX28DRAFT_4540 and EX28DRAFT_4541 are separated by 41 nucleotides EX28DRAFT_4541 and EX28DRAFT_4542 are separated by 186 nucleotides EX28DRAFT_4542 and EX28DRAFT_4543 are separated by 11 nucleotides
EX28DRAFT_4539: EX28DRAFT_4539 - uroporphyrinogen decarboxylase (EC 4.1.1.37), at 22,269 to 23,333
_4539
EX28DRAFT_4540: EX28DRAFT_4540 - Endonuclease V (EC 3.1.21.-), at 23,343 to 24,014
_4540
EX28DRAFT_4541: EX28DRAFT_4541 - Uncharacterized protein conserved in bacteria, at 24,056 to 24,646
_4541
EX28DRAFT_4542: EX28DRAFT_4542 - Bacterial nucleoid DNA-binding protein, at 24,833 to 25,105
_4542
EX28DRAFT_4543: EX28DRAFT_4543 - Protein of unknown function (DUF1481), at 25,117 to 25,809
_4543
Position (kb) 24
25 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 23.331 kb on + strand at 23.430 kb on + strand, within EX28DRAFT_4540 at 23.661 kb on - strand, within EX28DRAFT_4540 at 24.021 kb on + strand at 24.152 kb on + strand, within EX28DRAFT_4541 at 24.194 kb on - strand, within EX28DRAFT_4541 at 24.197 kb on + strand, within EX28DRAFT_4541 at 24.424 kb on + strand, within EX28DRAFT_4541 at 24.424 kb on + strand, within EX28DRAFT_4541 at 24.424 kb on + strand, within EX28DRAFT_4541 at 24.424 kb on + strand, within EX28DRAFT_4541 at 24.600 kb on + strand at 24.717 kb on - strand at 24.755 kb on + strand at 24.756 kb on - strand at 24.756 kb on - strand at 24.800 kb on + strand at 24.801 kb on - strand at 24.827 kb on + strand at 24.832 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.859 kb on - strand at 24.895 kb on + strand, within EX28DRAFT_4542 at 24.913 kb on + strand, within EX28DRAFT_4542 at 25.006 kb on + strand, within EX28DRAFT_4542 at 25.079 kb on - strand at 25.099 kb on + strand at 25.103 kb on + strand at 25.104 kb on - strand at 25.129 kb on - strand at 25.344 kb on + strand, within EX28DRAFT_4543 at 25.344 kb on + strand, within EX28DRAFT_4543 at 25.344 kb on + strand, within EX28DRAFT_4543 at 25.345 kb on - strand, within EX28DRAFT_4543 at 25.345 kb on - strand, within EX28DRAFT_4543 at 25.345 kb on - strand, within EX28DRAFT_4543 at 25.406 kb on - strand, within EX28DRAFT_4543 at 25.406 kb on - strand, within EX28DRAFT_4543 at 25.465 kb on - strand, within EX28DRAFT_4543
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 23,331 + -0.6 23,430 + EX28DRAFT_4540 0.13 -0.4 23,661 - EX28DRAFT_4540 0.47 +0.4 24,021 + -0.7 24,152 + EX28DRAFT_4541 0.16 -0.8 24,194 - EX28DRAFT_4541 0.23 -0.2 24,197 + EX28DRAFT_4541 0.24 -0.6 24,424 + EX28DRAFT_4541 0.62 -4.0 24,424 + EX28DRAFT_4541 0.62 -2.4 24,424 + EX28DRAFT_4541 0.62 -1.1 24,424 + EX28DRAFT_4541 0.62 -3.1 24,600 + +1.0 24,717 - -0.2 24,755 + +0.2 24,756 - -0.9 24,756 - +0.0 24,800 + -2.0 24,801 - +0.1 24,827 + +0.0 24,832 + -0.2 24,858 + -2.2 24,858 + -0.1 24,859 - -1.1 24,895 + EX28DRAFT_4542 0.23 -0.3 24,913 + EX28DRAFT_4542 0.29 +0.1 25,006 + EX28DRAFT_4542 0.63 -0.4 25,079 - -0.5 25,099 + -0.1 25,103 + +0.1 25,104 - -1.3 25,129 - -1.1 25,344 + EX28DRAFT_4543 0.33 +0.3 25,344 + EX28DRAFT_4543 0.33 -0.7 25,344 + EX28DRAFT_4543 0.33 +1.1 25,345 - EX28DRAFT_4543 0.33 +1.2 25,345 - EX28DRAFT_4543 0.33 -1.0 25,345 - EX28DRAFT_4543 0.33 -0.6 25,406 - EX28DRAFT_4543 0.42 +0.7 25,406 - EX28DRAFT_4543 0.42 +0.4 25,465 - EX28DRAFT_4543 0.50 -0.0
Or see this region's nucleotide sequence