Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4457 and EX28DRAFT_4458 overlap by 4 nucleotides EX28DRAFT_4458 and EX28DRAFT_4459 are separated by 4 nucleotides EX28DRAFT_4459 and EX28DRAFT_4460 are separated by 1 nucleotides
EX28DRAFT_4457: EX28DRAFT_4457 - nucleotide sugar dehydrogenase, at 24,117 to 25,379
_4457
EX28DRAFT_4458: EX28DRAFT_4458 - TDP-D-fucosamine acetyltransferase, at 25,376 to 26,053
_4458
EX28DRAFT_4459: EX28DRAFT_4459 - TDP-4-keto-6-deoxy-D-glucose transaminase, at 26,058 to 27,188
_4459
EX28DRAFT_4460: EX28DRAFT_4460 - Membrane protein involved in the export of O-antigen and teichoic acid, at 27,190 to 28,440
_4460
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.297 kb on + strand at 25.347 kb on + strand at 25.347 kb on + strand at 25.348 kb on - strand at 25.349 kb on + strand at 25.350 kb on - strand at 26.046 kb on - strand at 26.103 kb on + strand at 26.103 kb on + strand at 26.104 kb on - strand at 26.105 kb on + strand at 26.106 kb on - strand at 26.106 kb on - strand at 26.293 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459 at 26.440 kb on - strand, within EX28DRAFT_4459 at 26.691 kb on - strand, within EX28DRAFT_4459 at 26.719 kb on + strand, within EX28DRAFT_4459 at 26.723 kb on + strand, within EX28DRAFT_4459 at 26.727 kb on + strand, within EX28DRAFT_4459 at 26.728 kb on - strand, within EX28DRAFT_4459 at 26.781 kb on + strand, within EX28DRAFT_4459 at 26.850 kb on + strand, within EX28DRAFT_4459 at 26.885 kb on + strand, within EX28DRAFT_4459 at 26.886 kb on - strand, within EX28DRAFT_4459 at 26.930 kb on + strand, within EX28DRAFT_4459 at 26.931 kb on - strand, within EX28DRAFT_4459 at 27.161 kb on + strand at 27.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 25,297 + -1.5 25,347 + +0.2 25,347 + +0.2 25,348 - -0.8 25,349 + +0.1 25,350 - +0.5 26,046 - -1.1 26,103 + -2.2 26,103 + -0.6 26,104 - +0.6 26,105 + -0.8 26,106 - -2.3 26,106 - +1.0 26,293 - EX28DRAFT_4459 0.21 +0.2 26,295 - EX28DRAFT_4459 0.21 -2.1 26,295 - EX28DRAFT_4459 0.21 -0.4 26,295 - EX28DRAFT_4459 0.21 -1.7 26,440 - EX28DRAFT_4459 0.34 -1.2 26,691 - EX28DRAFT_4459 0.56 -0.5 26,719 + EX28DRAFT_4459 0.58 -1.7 26,723 + EX28DRAFT_4459 0.59 -0.6 26,727 + EX28DRAFT_4459 0.59 -0.0 26,728 - EX28DRAFT_4459 0.59 -1.4 26,781 + EX28DRAFT_4459 0.64 -3.4 26,850 + EX28DRAFT_4459 0.70 -3.3 26,885 + EX28DRAFT_4459 0.73 -0.7 26,886 - EX28DRAFT_4459 0.73 -1.5 26,930 + EX28DRAFT_4459 0.77 -2.2 26,931 - EX28DRAFT_4459 0.77 -1.1 27,161 + -0.3 27,189 + +0.5
Or see this region's nucleotide sequence