Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4227

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4225 and EX28DRAFT_4226 are separated by 256 nucleotides EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210 _4225 EX28DRAFT_4226: EX28DRAFT_4226 - formate dehydrogenase alpha subunit (EC 1.2.1.2), at 32,467 to 34,614 _4226 EX28DRAFT_4227: EX28DRAFT_4227 - RNA, at 32,879 to 32,933 _4227 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.910 kb on - strand, within EX28DRAFT_4225at 31.910 kb on - strand, within EX28DRAFT_4225at 32.048 kb on + strand, within EX28DRAFT_4225at 32.187 kb on + strandat 32.187 kb on + strandat 32.187 kb on + strandat 32.187 kb on + strandat 32.188 kb on - strandat 32.188 kb on - strandat 32.188 kb on - strandat 32.232 kb on + strandat 32.233 kb on - strandat 32.395 kb on - strandat 32.429 kb on + strandat 32.605 kb on + strandat 32.605 kb on + strandat 32.606 kb on - strandat 32.623 kb on - strandat 32.758 kb on + strand, within EX28DRAFT_4226at 32.758 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.957 kb on + strandat 32.958 kb on - strandat 32.962 kb on - strandat 32.962 kb on - strandat 32.989 kb on + strandat 33.168 kb on + strandat 33.319 kb on + strandat 33.320 kb on - strandat 33.462 kb on - strandat 33.533 kb on - strandat 33.661 kb on + strandat 33.661 kb on + strandat 33.753 kb on + strandat 33.753 kb on + strandat 33.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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31,910 - EX28DRAFT_4225 0.59 -1.6
31,910 - EX28DRAFT_4225 0.59 -3.3
32,048 + EX28DRAFT_4225 0.78 +0.5
32,187 + +1.8
32,187 + -0.0
32,187 + +0.5
32,187 + +0.4
32,188 - +0.7
32,188 - -0.4
32,188 - -0.3
32,232 + +0.6
32,233 - +1.2
32,395 - +0.2
32,429 + +0.1
32,605 + +0.4
32,605 + +0.1
32,606 - +0.7
32,623 - +0.7
32,758 + EX28DRAFT_4226 0.14 +0.7
32,758 + EX28DRAFT_4226 0.14 -0.6
32,818 + EX28DRAFT_4226 0.16 -0.3
32,818 + EX28DRAFT_4226 0.16 +0.3
32,818 + EX28DRAFT_4226 0.16 -0.0
32,819 - EX28DRAFT_4226 0.16 +0.2
32,819 - EX28DRAFT_4226 0.16 +0.1
32,819 - EX28DRAFT_4226 0.16 +0.2
32,957 + +0.5
32,958 - +0.7
32,962 - -0.1
32,962 - -0.2
32,989 + -0.0
33,168 + -1.1
33,319 + +0.0
33,320 - +0.3
33,462 - +0.0
33,533 - +0.5
33,661 + -0.7
33,661 + -0.4
33,753 + +0.3
33,753 + -0.5
33,755 - -0.4

Or see this region's nucleotide sequence