Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4133 and EX28DRAFT_4134 are separated by 30 nucleotides EX28DRAFT_4134 and EX28DRAFT_4135 are separated by 206 nucleotides EX28DRAFT_4135 and EX28DRAFT_4136 are separated by 8 nucleotides EX28DRAFT_4136 and EX28DRAFT_4137 are separated by 88 nucleotides EX28DRAFT_4137 and EX28DRAFT_4138 are separated by 232 nucleotides
EX28DRAFT_4133: EX28DRAFT_4133 - ferrous iron transporter FeoB, at 111,703 to 114,021
_4133
EX28DRAFT_4134: EX28DRAFT_4134 - Fe2+ transport system protein A, at 114,052 to 114,279
_4134
EX28DRAFT_4135: EX28DRAFT_4135 - hypothetical protein, at 114,486 to 114,608
_4135
EX28DRAFT_4136: EX28DRAFT_4136 - Transcriptional accessory protein, at 114,617 to 116,947
_4136
EX28DRAFT_4137: EX28DRAFT_4137 - transcription elongation factor GreB, at 117,036 to 117,509
_4137
EX28DRAFT_4138: EX28DRAFT_4138 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 117,742 to 118,461
_4138
Position (kb)
114
115
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 113.714 kb on + strand, within EX28DRAFT_4133 at 113.715 kb on - strand, within EX28DRAFT_4133 at 113.722 kb on - strand, within EX28DRAFT_4133 at 113.781 kb on + strand, within EX28DRAFT_4133 at 113.782 kb on - strand, within EX28DRAFT_4133 at 113.784 kb on - strand, within EX28DRAFT_4133 at 113.902 kb on - strand at 113.986 kb on - strand at 113.998 kb on + strand at 114.007 kb on - strand at 114.076 kb on + strand, within EX28DRAFT_4134 at 114.096 kb on + strand, within EX28DRAFT_4134 at 114.112 kb on + strand, within EX28DRAFT_4134 at 114.307 kb on + strand at 114.308 kb on - strand at 114.312 kb on - strand at 114.352 kb on + strand at 114.381 kb on - strand at 114.383 kb on + strand at 114.465 kb on + strand at 114.503 kb on + strand, within EX28DRAFT_4135 at 114.503 kb on + strand, within EX28DRAFT_4135 at 114.506 kb on - strand, within EX28DRAFT_4135 at 114.910 kb on + strand, within EX28DRAFT_4136 at 115.213 kb on + strand, within EX28DRAFT_4136 at 115.214 kb on - strand, within EX28DRAFT_4136 at 115.527 kb on - strand, within EX28DRAFT_4136 at 115.539 kb on + strand, within EX28DRAFT_4136 at 115.815 kb on + strand, within EX28DRAFT_4136 at 115.875 kb on + strand, within EX28DRAFT_4136 at 116.326 kb on - strand, within EX28DRAFT_4136 at 116.400 kb on + strand, within EX28DRAFT_4136 at 116.458 kb on - strand, within EX28DRAFT_4136 at 116.629 kb on - strand, within EX28DRAFT_4136 at 116.637 kb on + strand, within EX28DRAFT_4136 at 116.785 kb on + strand at 116.886 kb on - strand at 116.908 kb on + strand at 116.920 kb on + strand at 116.984 kb on + strand at 116.985 kb on - strand at 116.985 kb on - strand at 116.985 kb on - strand at 116.989 kb on - strand at 116.989 kb on - strand at 116.989 kb on - strand at 117.042 kb on + strand at 117.043 kb on - strand at 117.064 kb on + strand at 117.065 kb on - strand at 117.065 kb on - strand at 117.160 kb on + strand, within EX28DRAFT_4137 at 117.160 kb on + strand, within EX28DRAFT_4137 at 117.161 kb on - strand, within EX28DRAFT_4137 at 117.161 kb on - strand, within EX28DRAFT_4137 at 117.362 kb on - strand, within EX28DRAFT_4137 at 117.367 kb on + strand, within EX28DRAFT_4137 at 117.535 kb on + strand at 117.553 kb on + strand at 117.553 kb on + strand at 117.582 kb on + strand at 117.583 kb on - strand at 117.593 kb on + strand at 117.593 kb on + strand at 117.614 kb on - strand at 117.625 kb on - strand at 117.638 kb on - strand at 117.668 kb on + strand at 117.669 kb on - strand at 117.681 kb on - strand at 117.700 kb on - strand at 117.700 kb on - strand at 117.809 kb on - strand at 117.936 kb on + strand, within EX28DRAFT_4138
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 113,714 + EX28DRAFT_4133 0.87 +0.5 113,715 - EX28DRAFT_4133 0.87 +0.7 113,722 - EX28DRAFT_4133 0.87 +0.0 113,781 + EX28DRAFT_4133 0.90 +0.5 113,782 - EX28DRAFT_4133 0.90 +0.4 113,784 - EX28DRAFT_4133 0.90 +1.6 113,902 - +0.8 113,986 - +1.7 113,998 + +1.0 114,007 - -0.9 114,076 + EX28DRAFT_4134 0.11 +0.3 114,096 + EX28DRAFT_4134 0.19 +0.6 114,112 + EX28DRAFT_4134 0.26 +1.8 114,307 + +1.8 114,308 - +0.6 114,312 - +0.8 114,352 + +0.6 114,381 - +0.8 114,383 + -1.7 114,465 + +0.6 114,503 + EX28DRAFT_4135 0.14 +0.6 114,503 + EX28DRAFT_4135 0.14 +2.3 114,506 - EX28DRAFT_4135 0.16 +0.7 114,910 + EX28DRAFT_4136 0.13 -1.3 115,213 + EX28DRAFT_4136 0.26 -0.3 115,214 - EX28DRAFT_4136 0.26 -1.5 115,527 - EX28DRAFT_4136 0.39 +0.2 115,539 + EX28DRAFT_4136 0.40 +0.3 115,815 + EX28DRAFT_4136 0.51 -0.2 115,875 + EX28DRAFT_4136 0.54 -0.3 116,326 - EX28DRAFT_4136 0.73 -0.1 116,400 + EX28DRAFT_4136 0.76 -0.4 116,458 - EX28DRAFT_4136 0.79 +0.0 116,629 - EX28DRAFT_4136 0.86 -1.7 116,637 + EX28DRAFT_4136 0.87 +0.1 116,785 + +0.0 116,886 - +0.5 116,908 + +0.1 116,920 + +0.3 116,984 + +0.4 116,985 - -0.3 116,985 - -1.0 116,985 - -3.2 116,989 - -0.5 116,989 - -0.4 116,989 - -0.3 117,042 + -0.5 117,043 - +1.7 117,064 + +1.3 117,065 - -1.7 117,065 - -0.2 117,160 + EX28DRAFT_4137 0.26 +0.7 117,160 + EX28DRAFT_4137 0.26 -1.1 117,161 - EX28DRAFT_4137 0.26 -0.7 117,161 - EX28DRAFT_4137 0.26 -0.2 117,362 - EX28DRAFT_4137 0.69 +0.1 117,367 + EX28DRAFT_4137 0.70 +0.1 117,535 + -0.9 117,553 + +0.7 117,553 + -0.1 117,582 + -0.4 117,583 - +0.3 117,593 + +0.4 117,593 + +0.1 117,614 - -0.7 117,625 - -3.5 117,638 - +0.2 117,668 + +0.5 117,669 - -0.4 117,681 - -0.1 117,700 - +1.2 117,700 - +0.1 117,809 - +0.7 117,936 + EX28DRAFT_4138 0.27 +0.1
Or see this region's nucleotide sequence