Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3996

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3995 and EX28DRAFT_3996 are separated by 122 nucleotidesEX28DRAFT_3996 and EX28DRAFT_3997 are separated by 36 nucleotidesEX28DRAFT_3997 and EX28DRAFT_3998 are separated by 62 nucleotides EX28DRAFT_3995: EX28DRAFT_3995 - Transcriptional regulator, at 204,976 to 205,947 _3995 EX28DRAFT_3996: EX28DRAFT_3996 - Phosphopantetheinyl transferase, at 206,070 to 206,816 _3996 EX28DRAFT_3997: EX28DRAFT_3997 - Predicted flavoprotein, at 206,853 to 207,419 _3997 EX28DRAFT_3998: EX28DRAFT_3998 - Permeases, at 207,482 to 208,819 _3998 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1 2at 205.096 kb on - strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.470 kb on - strand, within EX28DRAFT_3995at 205.522 kb on + strand, within EX28DRAFT_3995at 205.640 kb on + strand, within EX28DRAFT_3995at 205.705 kb on - strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.762 kb on + strand, within EX28DRAFT_3995at 205.763 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.860 kb on + strandat 205.861 kb on - strandat 205.918 kb on + strandat 205.918 kb on + strandat 205.919 kb on - strandat 205.956 kb on - strandat 205.980 kb on + strandat 205.980 kb on + strandat 205.991 kb on - strandat 205.998 kb on - strandat 206.029 kb on + strandat 206.096 kb on - strandat 206.099 kb on + strandat 206.099 kb on + strandat 206.156 kb on + strand, within EX28DRAFT_3996at 206.157 kb on - strand, within EX28DRAFT_3996at 206.189 kb on - strand, within EX28DRAFT_3996at 206.320 kb on - strand, within EX28DRAFT_3996at 206.331 kb on - strand, within EX28DRAFT_3996at 206.331 kb on - strand, within EX28DRAFT_3996at 206.509 kb on + strand, within EX28DRAFT_3996at 206.614 kb on + strand, within EX28DRAFT_3996at 206.811 kb on - strandat 206.848 kb on + strandat 206.848 kb on + strandat 206.848 kb on + strandat 206.861 kb on + strandat 206.861 kb on + strandat 206.862 kb on - strandat 206.872 kb on + strandat 206.876 kb on + strandat 206.876 kb on + strandat 206.876 kb on + strandat 206.877 kb on - strandat 206.877 kb on - strandat 206.877 kb on - strandat 206.978 kb on + strand, within EX28DRAFT_3997at 206.997 kb on + strand, within EX28DRAFT_3997at 207.010 kb on + strand, within EX28DRAFT_3997at 207.100 kb on - strand, within EX28DRAFT_3997at 207.101 kb on + strand, within EX28DRAFT_3997at 207.102 kb on - strand, within EX28DRAFT_3997at 207.102 kb on - strand, within EX28DRAFT_3997at 207.106 kb on - strand, within EX28DRAFT_3997at 207.106 kb on - strand, within EX28DRAFT_3997at 207.106 kb on - strand, within EX28DRAFT_3997at 207.293 kb on + strand, within EX28DRAFT_3997at 207.294 kb on - strand, within EX28DRAFT_3997at 207.396 kb on + strandat 207.396 kb on + strandat 207.398 kb on + strandat 207.398 kb on + strandat 207.399 kb on - strandat 207.399 kb on - strandat 207.399 kb on - strandat 207.399 kb on - strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.418 kb on - strandat 207.418 kb on - strandat 207.418 kb on - strandat 207.423 kb on + strandat 207.424 kb on - strandat 207.424 kb on - strandat 207.424 kb on - strandat 207.484 kb on - strandat 207.496 kb on + strandat 207.497 kb on - strandat 207.582 kb on - strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.596 kb on - strandat 207.656 kb on - strand, within EX28DRAFT_3998at 207.729 kb on + strand, within EX28DRAFT_3998at 207.729 kb on + strand, within EX28DRAFT_3998at 207.730 kb on - strand, within EX28DRAFT_3998at 207.754 kb on - strand, within EX28DRAFT_3998at 207.809 kb on - strand, within EX28DRAFT_3998

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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205,096 - EX28DRAFT_3995 0.12 -0.1
205,469 + EX28DRAFT_3995 0.51 +0.2
205,469 + EX28DRAFT_3995 0.51 +0.4
205,470 - EX28DRAFT_3995 0.51 +0.5
205,522 + EX28DRAFT_3995 0.56 +0.6
205,640 + EX28DRAFT_3995 0.68 +0.4
205,705 - EX28DRAFT_3995 0.75 +0.1
205,729 + EX28DRAFT_3995 0.77 -1.2
205,729 + EX28DRAFT_3995 0.77 -0.4
205,729 + EX28DRAFT_3995 0.77 -0.3
205,730 - EX28DRAFT_3995 0.78 -0.0
205,730 - EX28DRAFT_3995 0.78 -0.1
205,730 - EX28DRAFT_3995 0.78 +1.1
205,730 - EX28DRAFT_3995 0.78 -0.6
205,762 + EX28DRAFT_3995 0.81 -0.1
205,763 - EX28DRAFT_3995 0.81 -0.1
205,834 - EX28DRAFT_3995 0.88 +1.2
205,834 - EX28DRAFT_3995 0.88 +0.1
205,860 + +0.1
205,861 - +1.1
205,918 + +0.5
205,918 + +0.3
205,919 - +0.6
205,956 - -1.8
205,980 + +0.3
205,980 + +2.2
205,991 - -2.2
205,998 - -0.4
206,029 + +1.0
206,096 - +0.3
206,099 + -1.2
206,099 + -0.3
206,156 + EX28DRAFT_3996 0.12 +0.3
206,157 - EX28DRAFT_3996 0.12 -1.4
206,189 - EX28DRAFT_3996 0.16 +0.1
206,320 - EX28DRAFT_3996 0.33 -0.6
206,331 - EX28DRAFT_3996 0.35 -0.1
206,331 - EX28DRAFT_3996 0.35 -1.4
206,509 + EX28DRAFT_3996 0.59 -0.2
206,614 + EX28DRAFT_3996 0.73 -1.5
206,811 - +0.2
206,848 + +0.6
206,848 + -0.0
206,848 + -0.4
206,861 + -0.3
206,861 + +0.2
206,862 - +0.4
206,872 + -0.2
206,876 + +0.8
206,876 + +0.0
206,876 + -0.6
206,877 - -0.2
206,877 - +0.8
206,877 - +0.2
206,978 + EX28DRAFT_3997 0.22 +0.5
206,997 + EX28DRAFT_3997 0.25 -0.2
207,010 + EX28DRAFT_3997 0.28 -2.4
207,100 - EX28DRAFT_3997 0.44 +0.8
207,101 + EX28DRAFT_3997 0.44 +0.2
207,102 - EX28DRAFT_3997 0.44 +0.4
207,102 - EX28DRAFT_3997 0.44 -0.7
207,106 - EX28DRAFT_3997 0.45 -1.3
207,106 - EX28DRAFT_3997 0.45 +1.1
207,106 - EX28DRAFT_3997 0.45 -0.2
207,293 + EX28DRAFT_3997 0.78 +0.6
207,294 - EX28DRAFT_3997 0.78 -0.1
207,396 + -0.5
207,396 + -0.2
207,398 + +0.2
207,398 + +0.2
207,399 - -0.8
207,399 - +0.0
207,399 - -0.2
207,399 - -1.3
207,401 + -0.2
207,401 + -0.3
207,418 - +0.1
207,418 - +0.0
207,418 - -0.1
207,423 + -0.3
207,424 - -0.9
207,424 - +0.3
207,424 - +0.1
207,484 - -0.7
207,496 + -0.7
207,497 - +0.6
207,582 - +0.0
207,595 + +0.4
207,595 + +2.3
207,596 - -0.7
207,656 - EX28DRAFT_3998 0.13 +0.6
207,729 + EX28DRAFT_3998 0.18 +0.9
207,729 + EX28DRAFT_3998 0.18 -0.7
207,730 - EX28DRAFT_3998 0.19 +0.6
207,754 - EX28DRAFT_3998 0.20 -0.1
207,809 - EX28DRAFT_3998 0.24 -1.0

Or see this region's nucleotide sequence