Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3966

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3965 and EX28DRAFT_3966 are separated by 17 nucleotidesEX28DRAFT_3966 and EX28DRAFT_3967 are separated by 82 nucleotidesEX28DRAFT_3967 and EX28DRAFT_3968 overlap by 11 nucleotidesEX28DRAFT_3968 and EX28DRAFT_3969 are separated by 92 nucleotides EX28DRAFT_3965: EX28DRAFT_3965 - gluconate transporter, at 173,198 to 174,535 _3965 EX28DRAFT_3966: EX28DRAFT_3966 - D-serine ammonia-lyase (EC 4.3.1.18), at 174,553 to 175,839 _3966 EX28DRAFT_3967: EX28DRAFT_3967 - Domain of unknown function (DUF202), at 175,922 to 176,269 _3967 EX28DRAFT_3968: EX28DRAFT_3968 - Predicted membrane protein, at 176,259 to 176,606 _3968 EX28DRAFT_3969: EX28DRAFT_3969 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 176,699 to 178,021 _3969 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 173.704 kb on + strand, within EX28DRAFT_3965at 173.704 kb on + strand, within EX28DRAFT_3965at 173.709 kb on + strand, within EX28DRAFT_3965at 173.751 kb on + strand, within EX28DRAFT_3965at 173.752 kb on - strand, within EX28DRAFT_3965at 173.973 kb on - strand, within EX28DRAFT_3965at 173.975 kb on - strand, within EX28DRAFT_3965at 174.038 kb on + strand, within EX28DRAFT_3965at 174.039 kb on - strand, within EX28DRAFT_3965at 174.061 kb on + strand, within EX28DRAFT_3965at 174.224 kb on - strand, within EX28DRAFT_3965at 174.462 kb on - strandat 174.462 kb on - strandat 174.464 kb on + strandat 174.465 kb on - strandat 174.466 kb on + strandat 174.529 kb on + strandat 174.530 kb on - strandat 174.549 kb on + strandat 174.549 kb on + strandat 174.550 kb on - strandat 174.553 kb on - strandat 174.553 kb on - strandat 174.568 kb on - strandat 174.568 kb on - strandat 174.568 kb on - strandat 174.573 kb on + strandat 174.574 kb on - strandat 174.578 kb on + strandat 174.673 kb on + strandat 174.736 kb on + strand, within EX28DRAFT_3966at 174.903 kb on + strand, within EX28DRAFT_3966at 174.922 kb on + strand, within EX28DRAFT_3966at 174.922 kb on + strand, within EX28DRAFT_3966at 174.922 kb on + strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.989 kb on - strand, within EX28DRAFT_3966at 175.014 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.120 kb on - strand, within EX28DRAFT_3966at 175.120 kb on - strand, within EX28DRAFT_3966at 175.370 kb on - strand, within EX28DRAFT_3966at 175.376 kb on - strand, within EX28DRAFT_3966at 175.502 kb on - strand, within EX28DRAFT_3966at 175.633 kb on + strand, within EX28DRAFT_3966at 175.658 kb on - strand, within EX28DRAFT_3966at 175.658 kb on - strand, within EX28DRAFT_3966at 175.820 kb on - strandat 175.820 kb on - strandat 175.838 kb on - strandat 175.838 kb on - strandat 175.841 kb on + strandat 175.842 kb on - strandat 175.873 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 176.003 kb on - strand, within EX28DRAFT_3967at 176.078 kb on + strand, within EX28DRAFT_3967at 176.270 kb on - strandat 176.339 kb on + strand, within EX28DRAFT_3968at 176.341 kb on + strand, within EX28DRAFT_3968at 176.648 kb on + strandat 176.648 kb on + strandat 176.649 kb on - strandat 176.718 kb on + strandat 176.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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173,704 + EX28DRAFT_3965 0.38 +0.1
173,704 + EX28DRAFT_3965 0.38 +0.5
173,709 + EX28DRAFT_3965 0.38 -0.4
173,751 + EX28DRAFT_3965 0.41 +1.3
173,752 - EX28DRAFT_3965 0.41 +1.9
173,973 - EX28DRAFT_3965 0.58 -1.2
173,975 - EX28DRAFT_3965 0.58 -0.2
174,038 + EX28DRAFT_3965 0.63 -2.3
174,039 - EX28DRAFT_3965 0.63 +1.0
174,061 + EX28DRAFT_3965 0.64 +0.1
174,224 - EX28DRAFT_3965 0.77 -0.1
174,462 - +0.6
174,462 - +0.3
174,464 + +1.2
174,465 - +1.1
174,466 + -0.6
174,529 + +0.3
174,530 - -0.3
174,549 + +0.3
174,549 + -0.1
174,550 - +0.1
174,553 - +0.1
174,553 - +1.0
174,568 - -0.8
174,568 - +0.1
174,568 - +0.9
174,573 + -0.8
174,574 - +0.2
174,578 + -0.4
174,673 + +1.5
174,736 + EX28DRAFT_3966 0.14 -1.1
174,903 + EX28DRAFT_3966 0.27 +0.6
174,922 + EX28DRAFT_3966 0.29 +0.0
174,922 + EX28DRAFT_3966 0.29 +0.5
174,922 + EX28DRAFT_3966 0.29 +0.4
174,923 - EX28DRAFT_3966 0.29 +0.8
174,923 - EX28DRAFT_3966 0.29 +0.7
174,923 - EX28DRAFT_3966 0.29 +0.2
174,989 - EX28DRAFT_3966 0.34 +1.6
175,014 + EX28DRAFT_3966 0.36 -0.3
175,119 + EX28DRAFT_3966 0.44 -0.0
175,119 + EX28DRAFT_3966 0.44 -0.3
175,119 + EX28DRAFT_3966 0.44 +0.1
175,119 + EX28DRAFT_3966 0.44 -0.8
175,119 + EX28DRAFT_3966 0.44 -0.0
175,120 - EX28DRAFT_3966 0.44 +0.1
175,120 - EX28DRAFT_3966 0.44 +1.3
175,370 - EX28DRAFT_3966 0.63 +0.7
175,376 - EX28DRAFT_3966 0.64 -0.4
175,502 - EX28DRAFT_3966 0.74 +0.3
175,633 + EX28DRAFT_3966 0.84 +0.9
175,658 - EX28DRAFT_3966 0.86 +0.1
175,658 - EX28DRAFT_3966 0.86 +0.0
175,820 - +0.5
175,820 - -0.9
175,838 - +1.6
175,838 - -0.3
175,841 + -0.0
175,842 - +0.4
175,873 + +0.2
175,891 + +0.2
175,891 + -0.3
175,891 + -0.3
176,003 - EX28DRAFT_3967 0.23 -0.4
176,078 + EX28DRAFT_3967 0.45 -0.3
176,270 - -0.8
176,339 + EX28DRAFT_3968 0.23 +0.1
176,341 + EX28DRAFT_3968 0.24 +0.4
176,648 + -0.3
176,648 + -0.2
176,649 - +0.0
176,718 + -0.1
176,719 - +1.3

Or see this region's nucleotide sequence