Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3950 and EX28DRAFT_3951 overlap by 8 nucleotides EX28DRAFT_3951 and EX28DRAFT_3952 overlap by 4 nucleotides EX28DRAFT_3952 and EX28DRAFT_3953 are separated by 100 nucleotides EX28DRAFT_3953 and EX28DRAFT_3954 are separated by 3 nucleotides
EX28DRAFT_3950: EX28DRAFT_3950 - phosphoglycerate transporter family protein, at 160,227 to 161,546
_3950
EX28DRAFT_3951: EX28DRAFT_3951 - Signal transduction histidine kinase, glucose-6-phosphate specific, at 161,539 to 163,044
_3951
EX28DRAFT_3952: EX28DRAFT_3952 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 163,041 to 163,634
_3952
EX28DRAFT_3953: EX28DRAFT_3953 - acetolactate synthase, small subunit (EC 2.2.1.6), at 163,735 to 164,022
_3953
EX28DRAFT_3954: EX28DRAFT_3954 - acetolactate synthase, large subunit (EC 2.2.1.6), at 164,026 to 165,714
_3954
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.768 kb on + strand, within EX28DRAFT_3950 at 160.769 kb on - strand, within EX28DRAFT_3950 at 160.781 kb on - strand, within EX28DRAFT_3950 at 160.805 kb on - strand, within EX28DRAFT_3950 at 160.822 kb on + strand, within EX28DRAFT_3950 at 160.823 kb on - strand, within EX28DRAFT_3950 at 161.014 kb on + strand, within EX28DRAFT_3950 at 161.067 kb on - strand, within EX28DRAFT_3950 at 161.116 kb on + strand, within EX28DRAFT_3950 at 161.269 kb on + strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.323 kb on + strand, within EX28DRAFT_3950 at 161.324 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.429 kb on - strand at 161.540 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.928 kb on + strand, within EX28DRAFT_3951 at 161.929 kb on - strand, within EX28DRAFT_3951 at 161.984 kb on + strand, within EX28DRAFT_3951 at 161.985 kb on - strand, within EX28DRAFT_3951 at 162.229 kb on + strand, within EX28DRAFT_3951 at 162.284 kb on - strand, within EX28DRAFT_3951 at 162.372 kb on - strand, within EX28DRAFT_3951 at 162.769 kb on - strand, within EX28DRAFT_3951 at 163.171 kb on - strand, within EX28DRAFT_3952 at 163.269 kb on + strand, within EX28DRAFT_3952 at 163.274 kb on - strand, within EX28DRAFT_3952 at 163.406 kb on + strand, within EX28DRAFT_3952 at 163.481 kb on + strand, within EX28DRAFT_3952 at 163.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 160,729 + EX28DRAFT_3950 0.38 +0.9 160,729 + EX28DRAFT_3950 0.38 -0.1 160,729 + EX28DRAFT_3950 0.38 +0.2 160,730 - EX28DRAFT_3950 0.38 +0.9 160,730 - EX28DRAFT_3950 0.38 +0.2 160,768 + EX28DRAFT_3950 0.41 +0.2 160,769 - EX28DRAFT_3950 0.41 +0.8 160,781 - EX28DRAFT_3950 0.42 +0.4 160,805 - EX28DRAFT_3950 0.44 -0.2 160,822 + EX28DRAFT_3950 0.45 +2.0 160,823 - EX28DRAFT_3950 0.45 +0.5 161,014 + EX28DRAFT_3950 0.60 -0.5 161,067 - EX28DRAFT_3950 0.64 -0.2 161,116 + EX28DRAFT_3950 0.67 -1.6 161,269 + EX28DRAFT_3950 0.79 -0.5 161,270 - EX28DRAFT_3950 0.79 -0.2 161,270 - EX28DRAFT_3950 0.79 +0.1 161,323 + EX28DRAFT_3950 0.83 -0.4 161,324 - EX28DRAFT_3950 0.83 -0.4 161,333 - EX28DRAFT_3950 0.84 +0.4 161,333 - EX28DRAFT_3950 0.84 +0.2 161,333 - EX28DRAFT_3950 0.84 +0.4 161,429 - +0.0 161,540 + +1.2 161,549 + +0.4 161,549 + +0.3 161,550 - +0.1 161,550 - +0.1 161,847 + EX28DRAFT_3951 0.20 +0.6 161,847 + EX28DRAFT_3951 0.20 -0.2 161,847 + EX28DRAFT_3951 0.20 -2.7 161,847 + EX28DRAFT_3951 0.20 +0.2 161,928 + EX28DRAFT_3951 0.26 +0.2 161,929 - EX28DRAFT_3951 0.26 -0.3 161,984 + EX28DRAFT_3951 0.30 -0.6 161,985 - EX28DRAFT_3951 0.30 +1.0 162,229 + EX28DRAFT_3951 0.46 -0.8 162,284 - EX28DRAFT_3951 0.49 -0.6 162,372 - EX28DRAFT_3951 0.55 -0.2 162,769 - EX28DRAFT_3951 0.82 -1.2 163,171 - EX28DRAFT_3952 0.22 -1.6 163,269 + EX28DRAFT_3952 0.38 -1.1 163,274 - EX28DRAFT_3952 0.39 -0.1 163,406 + EX28DRAFT_3952 0.61 +1.2 163,481 + EX28DRAFT_3952 0.74 +0.2 163,602 - -0.2
Or see this region's nucleotide sequence