Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3910

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3908 and EX28DRAFT_3909 are separated by 134 nucleotidesEX28DRAFT_3909 and EX28DRAFT_3910 overlap by 4 nucleotidesEX28DRAFT_3910 and EX28DRAFT_3911 are separated by 28 nucleotidesEX28DRAFT_3911 and EX28DRAFT_3912 are separated by 93 nucleotides EX28DRAFT_3908: EX28DRAFT_3908 - hypothetical protein, at 120,451 to 120,690 _3908 EX28DRAFT_3909: EX28DRAFT_3909 - Uncharacterized protein conserved in bacteria, at 120,825 to 121,175 _3909 EX28DRAFT_3910: EX28DRAFT_3910 - Helix-turn-helix domain, at 121,172 to 121,471 _3910 EX28DRAFT_3911: EX28DRAFT_3911 - Sortase and related acyltransferases, at 121,500 to 121,949 _3911 EX28DRAFT_3912: EX28DRAFT_3912 - hypothetical protein, at 122,043 to 123,041 _3912 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.230 kb on + strandat 120.233 kb on - strandat 120.332 kb on - strandat 120.450 kb on - strandat 120.505 kb on - strand, within EX28DRAFT_3908at 120.575 kb on + strand, within EX28DRAFT_3908at 120.583 kb on + strand, within EX28DRAFT_3908at 120.655 kb on - strand, within EX28DRAFT_3908at 120.725 kb on - strandat 120.737 kb on - strandat 120.777 kb on + strandat 120.791 kb on + strandat 120.850 kb on + strandat 120.851 kb on - strandat 120.913 kb on + strand, within EX28DRAFT_3909at 120.928 kb on - strand, within EX28DRAFT_3909at 120.978 kb on + strand, within EX28DRAFT_3909at 120.979 kb on - strand, within EX28DRAFT_3909at 121.002 kb on - strand, within EX28DRAFT_3909at 121.024 kb on + strand, within EX28DRAFT_3909at 121.025 kb on - strand, within EX28DRAFT_3909at 121.089 kb on - strand, within EX28DRAFT_3909at 121.104 kb on + strand, within EX28DRAFT_3909at 121.105 kb on - strand, within EX28DRAFT_3909at 121.183 kb on - strandat 121.225 kb on + strand, within EX28DRAFT_3910at 121.225 kb on + strand, within EX28DRAFT_3910at 121.387 kb on + strand, within EX28DRAFT_3910at 121.395 kb on - strand, within EX28DRAFT_3910at 121.466 kb on - strandat 121.470 kb on - strandat 121.494 kb on + strandat 121.517 kb on + strandat 121.517 kb on + strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.584 kb on - strand, within EX28DRAFT_3911at 121.584 kb on - strand, within EX28DRAFT_3911at 121.755 kb on + strand, within EX28DRAFT_3911at 121.756 kb on - strand, within EX28DRAFT_3911at 121.756 kb on - strand, within EX28DRAFT_3911at 121.805 kb on - strand, within EX28DRAFT_3911at 121.929 kb on + strandat 121.966 kb on + strandat 121.967 kb on - strandat 122.044 kb on + strandat 122.045 kb on - strandat 122.068 kb on + strandat 122.454 kb on - strand, within EX28DRAFT_3912

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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120,230 + +2.0
120,233 - +0.2
120,332 - +0.0
120,450 - +0.3
120,505 - EX28DRAFT_3908 0.23 +0.4
120,575 + EX28DRAFT_3908 0.52 +0.3
120,583 + EX28DRAFT_3908 0.55 +0.4
120,655 - EX28DRAFT_3908 0.85 +0.4
120,725 - -2.4
120,737 - +0.2
120,777 + +0.1
120,791 + -1.2
120,850 + +0.1
120,851 - -2.7
120,913 + EX28DRAFT_3909 0.25 +1.0
120,928 - EX28DRAFT_3909 0.29 -0.5
120,978 + EX28DRAFT_3909 0.44 -1.0
120,979 - EX28DRAFT_3909 0.44 +1.6
121,002 - EX28DRAFT_3909 0.50 +0.0
121,024 + EX28DRAFT_3909 0.57 +0.2
121,025 - EX28DRAFT_3909 0.57 -0.2
121,089 - EX28DRAFT_3909 0.75 +0.2
121,104 + EX28DRAFT_3909 0.79 +0.2
121,105 - EX28DRAFT_3909 0.80 +0.2
121,183 - +1.6
121,225 + EX28DRAFT_3910 0.18 -0.7
121,225 + EX28DRAFT_3910 0.18 +0.4
121,387 + EX28DRAFT_3910 0.72 -0.5
121,395 - EX28DRAFT_3910 0.74 -1.5
121,466 - +0.0
121,470 - +0.1
121,494 + +0.5
121,517 + +0.1
121,517 + +0.1
121,518 - +0.4
121,518 - -0.8
121,518 - +0.0
121,518 - +0.5
121,521 + -0.1
121,521 + -0.0
121,521 + +0.4
121,521 + +0.2
121,522 - +0.4
121,522 - -0.3
121,522 - +0.5
121,522 - -0.0
121,522 - +0.7
121,584 - EX28DRAFT_3911 0.19 +0.3
121,584 - EX28DRAFT_3911 0.19 -0.2
121,755 + EX28DRAFT_3911 0.57 +0.6
121,756 - EX28DRAFT_3911 0.57 -0.4
121,756 - EX28DRAFT_3911 0.57 -0.3
121,805 - EX28DRAFT_3911 0.68 -0.0
121,929 + -0.4
121,966 + +0.6
121,967 - +0.1
122,044 + +0.0
122,045 - -0.0
122,068 + +0.3
122,454 - EX28DRAFT_3912 0.41 +0.2

Or see this region's nucleotide sequence