Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3804 and EX28DRAFT_3805 are separated by 620 nucleotides EX28DRAFT_3805 and EX28DRAFT_3806 are separated by 91 nucleotides EX28DRAFT_3806 and EX28DRAFT_3807 are separated by 239 nucleotides
EX28DRAFT_3804: EX28DRAFT_3804 - ABC-type dipeptide transport system, periplasmic component, at 6,773 to 8,380
_3804
EX28DRAFT_3805: EX28DRAFT_3805 - tRNA, at 9,001 to 9,077
_3805
EX28DRAFT_3806: EX28DRAFT_3806 - Predicted membrane-associated, metal-dependent hydrolase, at 9,169 to 10,863
_3806
EX28DRAFT_3807: EX28DRAFT_3807 - oxalate/formate antiporter family transporter, at 11,103 to 12,305
_3807
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 8.199 kb on + strand, within EX28DRAFT_3804 at 8.199 kb on + strand, within EX28DRAFT_3804 at 8.199 kb on + strand, within EX28DRAFT_3804 at 8.200 kb on - strand, within EX28DRAFT_3804 at 8.200 kb on - strand, within EX28DRAFT_3804 at 8.200 kb on - strand, within EX28DRAFT_3804 at 8.200 kb on - strand, within EX28DRAFT_3804 at 8.200 kb on - strand, within EX28DRAFT_3804 at 8.240 kb on - strand at 8.284 kb on - strand at 8.284 kb on - strand at 8.374 kb on + strand at 8.434 kb on - strand at 8.584 kb on - strand at 8.675 kb on + strand at 8.772 kb on - strand at 8.833 kb on - strand at 8.857 kb on + strand at 8.857 kb on + strand at 8.857 kb on + strand at 8.859 kb on + strand at 8.950 kb on - strand at 8.950 kb on - strand at 9.095 kb on - strand at 9.170 kb on + strand at 9.204 kb on + strand at 9.204 kb on + strand at 9.246 kb on + strand at 9.247 kb on - strand at 9.247 kb on - strand at 9.264 kb on + strand at 9.276 kb on - strand at 9.362 kb on + strand, within EX28DRAFT_3806 at 9.363 kb on - strand, within EX28DRAFT_3806 at 9.366 kb on + strand, within EX28DRAFT_3806 at 9.542 kb on + strand, within EX28DRAFT_3806 at 9.542 kb on + strand, within EX28DRAFT_3806 at 9.542 kb on + strand, within EX28DRAFT_3806 at 9.543 kb on - strand, within EX28DRAFT_3806 at 9.594 kb on + strand, within EX28DRAFT_3806 at 9.594 kb on + strand, within EX28DRAFT_3806 at 9.659 kb on + strand, within EX28DRAFT_3806 at 9.800 kb on + strand, within EX28DRAFT_3806 at 9.811 kb on - strand, within EX28DRAFT_3806 at 9.830 kb on + strand, within EX28DRAFT_3806 at 9.830 kb on + strand, within EX28DRAFT_3806 at 9.831 kb on - strand, within EX28DRAFT_3806 at 9.870 kb on + strand, within EX28DRAFT_3806 at 9.871 kb on - strand, within EX28DRAFT_3806 at 10.048 kb on - strand, within EX28DRAFT_3806 at 10.115 kb on + strand, within EX28DRAFT_3806 at 10.115 kb on + strand, within EX28DRAFT_3806 at 10.115 kb on + strand, within EX28DRAFT_3806 at 10.115 kb on + strand, within EX28DRAFT_3806 at 10.115 kb on + strand, within EX28DRAFT_3806 at 10.116 kb on - strand, within EX28DRAFT_3806 at 10.116 kb on - strand, within EX28DRAFT_3806 at 10.116 kb on - strand, within EX28DRAFT_3806 at 10.120 kb on - strand, within EX28DRAFT_3806 at 10.120 kb on - strand, within EX28DRAFT_3806 at 10.120 kb on - strand, within EX28DRAFT_3806 at 10.149 kb on - strand, within EX28DRAFT_3806 at 10.217 kb on + strand, within EX28DRAFT_3806 at 10.254 kb on - strand, within EX28DRAFT_3806 at 10.254 kb on - strand, within EX28DRAFT_3806 at 10.254 kb on - strand, within EX28DRAFT_3806 at 10.277 kb on + strand, within EX28DRAFT_3806 at 10.287 kb on + strand, within EX28DRAFT_3806 at 10.428 kb on + strand, within EX28DRAFT_3806 at 10.428 kb on + strand, within EX28DRAFT_3806 at 10.430 kb on + strand, within EX28DRAFT_3806 at 10.440 kb on + strand, within EX28DRAFT_3806 at 10.478 kb on - strand, within EX28DRAFT_3806 at 10.581 kb on + strand, within EX28DRAFT_3806 at 10.581 kb on + strand, within EX28DRAFT_3806 at 10.582 kb on - strand, within EX28DRAFT_3806 at 10.582 kb on - strand, within EX28DRAFT_3806 at 10.593 kb on - strand, within EX28DRAFT_3806 at 10.593 kb on - strand, within EX28DRAFT_3806 at 10.595 kb on + strand, within EX28DRAFT_3806 at 10.595 kb on + strand, within EX28DRAFT_3806 at 10.596 kb on - strand, within EX28DRAFT_3806 at 10.596 kb on - strand, within EX28DRAFT_3806 at 10.615 kb on - strand, within EX28DRAFT_3806 at 10.647 kb on + strand, within EX28DRAFT_3806 at 10.676 kb on - strand, within EX28DRAFT_3806 at 10.676 kb on - strand, within EX28DRAFT_3806 at 10.708 kb on + strand at 10.708 kb on + strand at 10.708 kb on + strand at 10.734 kb on + strand at 10.735 kb on - strand at 10.735 kb on - strand at 10.735 kb on - strand at 10.735 kb on - strand at 10.757 kb on + strand at 10.781 kb on - strand at 10.798 kb on + strand at 10.809 kb on - strand at 10.852 kb on - strand at 10.856 kb on + strand at 10.856 kb on + strand at 10.857 kb on - strand at 10.887 kb on + strand at 10.890 kb on - strand at 10.931 kb on + strand at 10.931 kb on + strand at 10.953 kb on + strand at 10.954 kb on - strand at 10.978 kb on + strand at 11.066 kb on + strand at 11.098 kb on - strand at 11.124 kb on + strand at 11.125 kb on - strand at 11.125 kb on - strand at 11.187 kb on + strand at 11.187 kb on + strand at 11.187 kb on + strand at 11.206 kb on + strand at 11.207 kb on - strand at 11.207 kb on - strand at 11.207 kb on - strand at 11.269 kb on + strand, within EX28DRAFT_3807 at 11.270 kb on - strand, within EX28DRAFT_3807 at 11.270 kb on - strand, within EX28DRAFT_3807 at 11.391 kb on - strand, within EX28DRAFT_3807 at 11.456 kb on + strand, within EX28DRAFT_3807 at 11.611 kb on + strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.670 kb on - strand, within EX28DRAFT_3807 at 11.801 kb on + strand, within EX28DRAFT_3807 at 11.801 kb on + strand, within EX28DRAFT_3807 at 11.802 kb on - strand, within EX28DRAFT_3807
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 8,199 + EX28DRAFT_3804 0.89 +1.0 8,199 + EX28DRAFT_3804 0.89 -1.2 8,199 + EX28DRAFT_3804 0.89 -2.0 8,200 - EX28DRAFT_3804 0.89 -0.1 8,200 - EX28DRAFT_3804 0.89 -1.7 8,200 - EX28DRAFT_3804 0.89 +2.2 8,200 - EX28DRAFT_3804 0.89 -3.2 8,200 - EX28DRAFT_3804 0.89 +0.2 8,240 - -1.2 8,284 - -0.2 8,284 - -0.5 8,374 + -3.4 8,434 - +0.6 8,584 - +0.4 8,675 + -0.2 8,772 - +0.6 8,833 - +0.1 8,857 + +1.2 8,857 + -0.9 8,857 + -0.0 8,859 + -0.2 8,950 - +1.1 8,950 - +0.6 9,095 - -0.2 9,170 + -0.3 9,204 + +0.7 9,204 + +0.8 9,246 + -1.2 9,247 - +0.8 9,247 - +0.2 9,264 + -0.5 9,276 - -0.0 9,362 + EX28DRAFT_3806 0.11 +0.5 9,363 - EX28DRAFT_3806 0.11 +0.7 9,366 + EX28DRAFT_3806 0.12 -0.8 9,542 + EX28DRAFT_3806 0.22 -0.2 9,542 + EX28DRAFT_3806 0.22 +0.1 9,542 + EX28DRAFT_3806 0.22 -0.0 9,543 - EX28DRAFT_3806 0.22 -0.0 9,594 + EX28DRAFT_3806 0.25 +0.8 9,594 + EX28DRAFT_3806 0.25 -0.3 9,659 + EX28DRAFT_3806 0.29 +0.3 9,800 + EX28DRAFT_3806 0.37 +0.4 9,811 - EX28DRAFT_3806 0.38 -0.0 9,830 + EX28DRAFT_3806 0.39 +0.8 9,830 + EX28DRAFT_3806 0.39 +0.6 9,831 - EX28DRAFT_3806 0.39 +0.6 9,870 + EX28DRAFT_3806 0.41 +0.1 9,871 - EX28DRAFT_3806 0.41 -1.5 10,048 - EX28DRAFT_3806 0.52 +0.2 10,115 + EX28DRAFT_3806 0.56 +0.6 10,115 + EX28DRAFT_3806 0.56 -0.1 10,115 + EX28DRAFT_3806 0.56 +0.3 10,115 + EX28DRAFT_3806 0.56 +2.3 10,115 + EX28DRAFT_3806 0.56 -0.1 10,116 - EX28DRAFT_3806 0.56 -1.2 10,116 - EX28DRAFT_3806 0.56 +0.4 10,116 - EX28DRAFT_3806 0.56 +0.1 10,120 - EX28DRAFT_3806 0.56 +0.4 10,120 - EX28DRAFT_3806 0.56 -0.3 10,120 - EX28DRAFT_3806 0.56 +0.6 10,149 - EX28DRAFT_3806 0.58 -0.0 10,217 + EX28DRAFT_3806 0.62 +0.4 10,254 - EX28DRAFT_3806 0.64 +0.0 10,254 - EX28DRAFT_3806 0.64 -0.2 10,254 - EX28DRAFT_3806 0.64 -0.3 10,277 + EX28DRAFT_3806 0.65 +0.1 10,287 + EX28DRAFT_3806 0.66 +0.9 10,428 + EX28DRAFT_3806 0.74 +0.2 10,428 + EX28DRAFT_3806 0.74 -1.4 10,430 + EX28DRAFT_3806 0.74 -0.6 10,440 + EX28DRAFT_3806 0.75 +0.4 10,478 - EX28DRAFT_3806 0.77 +0.5 10,581 + EX28DRAFT_3806 0.83 -0.7 10,581 + EX28DRAFT_3806 0.83 +0.1 10,582 - EX28DRAFT_3806 0.83 -0.2 10,582 - EX28DRAFT_3806 0.83 -1.1 10,593 - EX28DRAFT_3806 0.84 +1.4 10,593 - EX28DRAFT_3806 0.84 +0.8 10,595 + EX28DRAFT_3806 0.84 +0.1 10,595 + EX28DRAFT_3806 0.84 +0.3 10,596 - EX28DRAFT_3806 0.84 +0.2 10,596 - EX28DRAFT_3806 0.84 +0.7 10,615 - EX28DRAFT_3806 0.85 -0.2 10,647 + EX28DRAFT_3806 0.87 -2.5 10,676 - EX28DRAFT_3806 0.89 +0.0 10,676 - EX28DRAFT_3806 0.89 -0.3 10,708 + -0.1 10,708 + -0.0 10,708 + +0.3 10,734 + -0.3 10,735 - +0.4 10,735 - +0.2 10,735 - +0.9 10,735 - -0.2 10,757 + -0.1 10,781 - -0.7 10,798 + +1.2 10,809 - +0.0 10,852 - -0.5 10,856 + -0.5 10,856 + +0.2 10,857 - +1.1 10,887 + +0.6 10,890 - -1.1 10,931 + -0.7 10,931 + -0.2 10,953 + -0.4 10,954 - -0.5 10,978 + +0.6 11,066 + +0.3 11,098 - +0.8 11,124 + +0.3 11,125 - -0.9 11,125 - +1.5 11,187 + -0.1 11,187 + +0.3 11,187 + +0.8 11,206 + +0.1 11,207 - +0.0 11,207 - -1.1 11,207 - -0.4 11,269 + EX28DRAFT_3807 0.14 -0.3 11,270 - EX28DRAFT_3807 0.14 +0.5 11,270 - EX28DRAFT_3807 0.14 +0.2 11,391 - EX28DRAFT_3807 0.24 +1.0 11,456 + EX28DRAFT_3807 0.29 +0.0 11,611 + EX28DRAFT_3807 0.42 -0.4 11,612 - EX28DRAFT_3807 0.42 +0.7 11,612 - EX28DRAFT_3807 0.42 -0.0 11,612 - EX28DRAFT_3807 0.42 +0.6 11,612 - EX28DRAFT_3807 0.42 -0.8 11,612 - EX28DRAFT_3807 0.42 -0.7 11,612 - EX28DRAFT_3807 0.42 +0.2 11,670 - EX28DRAFT_3807 0.47 -0.5 11,801 + EX28DRAFT_3807 0.58 +0.9 11,801 + EX28DRAFT_3807 0.58 -0.8 11,802 - EX28DRAFT_3807 0.58 +0.3
Or see this region's nucleotide sequence