Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3434 and EX28DRAFT_3435 overlap by 11 nucleotides EX28DRAFT_3435 and EX28DRAFT_3436 are separated by 3 nucleotides EX28DRAFT_3436 and EX28DRAFT_3437 are separated by 97 nucleotides EX28DRAFT_3437 and EX28DRAFT_3438 are separated by 376 nucleotides
EX28DRAFT_3434: EX28DRAFT_3434 - addiction module antitoxin, RelB/DinJ family, at 104,477 to 104,719
_3434
EX28DRAFT_3435: EX28DRAFT_3435 - addiction module toxin, RelE/StbE family, at 104,709 to 104,993
_3435
EX28DRAFT_3436: EX28DRAFT_3436 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 104,997 to 105,461
_3436
EX28DRAFT_3437: EX28DRAFT_3437 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 105,559 to 107,697
_3437
EX28DRAFT_3438: EX28DRAFT_3438 - alpha,alpha-phosphotrehalase, at 108,074 to 109,717
_3438
Position (kb)
105
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 104.586 kb on - strand, within EX28DRAFT_3434 at 104.630 kb on - strand, within EX28DRAFT_3434 at 104.696 kb on - strand at 104.696 kb on - strand at 104.701 kb on + strand at 104.715 kb on + strand at 104.716 kb on - strand at 104.773 kb on + strand, within EX28DRAFT_3435 at 104.774 kb on - strand, within EX28DRAFT_3435 at 104.785 kb on + strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.926 kb on + strand, within EX28DRAFT_3435 at 104.946 kb on - strand, within EX28DRAFT_3435 at 104.991 kb on + strand at 104.992 kb on - strand at 104.995 kb on + strand at 105.016 kb on - strand at 105.058 kb on - strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.143 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.442 kb on + strand at 105.442 kb on + strand at 105.445 kb on + strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.462 kb on - strand at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437 at 106.074 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.226 kb on + strand, within EX28DRAFT_3437 at 106.226 kb on + strand, within EX28DRAFT_3437 at 106.315 kb on - strand, within EX28DRAFT_3437 at 106.316 kb on + strand, within EX28DRAFT_3437 at 106.317 kb on - strand, within EX28DRAFT_3437 at 106.317 kb on - strand, within EX28DRAFT_3437 at 106.362 kb on + strand, within EX28DRAFT_3437 at 106.595 kb on + strand, within EX28DRAFT_3437 at 106.596 kb on - strand, within EX28DRAFT_3437 at 106.596 kb on - strand, within EX28DRAFT_3437 at 106.614 kb on - strand, within EX28DRAFT_3437 at 106.658 kb on + strand, within EX28DRAFT_3437 at 106.658 kb on + strand, within EX28DRAFT_3437 at 106.865 kb on - strand, within EX28DRAFT_3437 at 106.895 kb on + strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.133 kb on + strand, within EX28DRAFT_3437 at 107.134 kb on - strand, within EX28DRAFT_3437 at 107.279 kb on + strand, within EX28DRAFT_3437 at 107.280 kb on - strand, within EX28DRAFT_3437 at 107.456 kb on + strand, within EX28DRAFT_3437 at 107.456 kb on + strand, within EX28DRAFT_3437 at 107.457 kb on - strand, within EX28DRAFT_3437 at 107.478 kb on - strand, within EX28DRAFT_3437 at 107.744 kb on + strand at 107.745 kb on - strand at 107.745 kb on - strand at 107.757 kb on + strand at 107.758 kb on - strand at 107.758 kb on - strand at 107.822 kb on + strand at 107.823 kb on - strand at 107.856 kb on - strand at 107.860 kb on - strand at 107.893 kb on + strand at 107.897 kb on + strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.948 kb on + strand at 107.963 kb on - strand at 108.160 kb on + strand at 108.348 kb on + strand, within EX28DRAFT_3438 at 108.349 kb on - strand, within EX28DRAFT_3438 at 108.349 kb on - strand, within EX28DRAFT_3438 at 108.399 kb on + strand, within EX28DRAFT_3438 at 108.400 kb on - strand, within EX28DRAFT_3438 at 108.400 kb on - strand, within EX28DRAFT_3438 at 108.640 kb on + strand, within EX28DRAFT_3438 at 108.643 kb on - strand, within EX28DRAFT_3438
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 104,586 - EX28DRAFT_3434 0.45 -0.7 104,630 - EX28DRAFT_3434 0.63 -0.7 104,696 - +0.4 104,696 - -0.2 104,701 + +0.4 104,715 + -0.0 104,716 - +0.1 104,773 + EX28DRAFT_3435 0.22 -1.0 104,774 - EX28DRAFT_3435 0.23 -0.0 104,785 + EX28DRAFT_3435 0.27 -0.1 104,786 - EX28DRAFT_3435 0.27 +0.3 104,786 - EX28DRAFT_3435 0.27 -0.0 104,926 + EX28DRAFT_3435 0.76 -0.1 104,946 - EX28DRAFT_3435 0.83 -0.1 104,991 + +0.5 104,992 - -0.3 104,995 + +0.4 105,016 - +0.8 105,058 - EX28DRAFT_3436 0.13 +0.8 105,140 + EX28DRAFT_3436 0.31 +0.3 105,140 + EX28DRAFT_3436 0.31 +0.4 105,142 + EX28DRAFT_3436 0.31 +0.3 105,142 + EX28DRAFT_3436 0.31 +0.1 105,143 - EX28DRAFT_3436 0.31 +0.1 105,162 - EX28DRAFT_3436 0.35 -0.0 105,162 - EX28DRAFT_3436 0.35 +0.7 105,162 - EX28DRAFT_3436 0.35 -0.3 105,442 + +0.5 105,442 + -0.6 105,445 + +0.7 105,446 - +0.5 105,446 - +0.3 105,446 - +0.4 105,462 - -0.5 105,981 - EX28DRAFT_3437 0.20 +0.2 105,981 - EX28DRAFT_3437 0.20 -0.1 105,981 - EX28DRAFT_3437 0.20 +1.0 105,984 - EX28DRAFT_3437 0.20 +0.2 105,984 - EX28DRAFT_3437 0.20 -1.7 106,074 - EX28DRAFT_3437 0.24 -2.4 106,176 - EX28DRAFT_3437 0.29 +0.5 106,176 - EX28DRAFT_3437 0.29 +1.3 106,176 - EX28DRAFT_3437 0.29 +0.5 106,179 + EX28DRAFT_3437 0.29 +1.0 106,179 + EX28DRAFT_3437 0.29 +0.6 106,179 + EX28DRAFT_3437 0.29 +0.4 106,180 - EX28DRAFT_3437 0.29 +0.7 106,180 - EX28DRAFT_3437 0.29 +1.5 106,180 - EX28DRAFT_3437 0.29 +0.2 106,180 - EX28DRAFT_3437 0.29 +1.4 106,180 - EX28DRAFT_3437 0.29 -0.0 106,226 + EX28DRAFT_3437 0.31 -0.6 106,226 + EX28DRAFT_3437 0.31 +0.2 106,315 - EX28DRAFT_3437 0.35 -0.4 106,316 + EX28DRAFT_3437 0.35 +0.7 106,317 - EX28DRAFT_3437 0.35 +0.1 106,317 - EX28DRAFT_3437 0.35 -0.3 106,362 + EX28DRAFT_3437 0.38 -0.2 106,595 + EX28DRAFT_3437 0.48 -0.3 106,596 - EX28DRAFT_3437 0.48 -0.1 106,596 - EX28DRAFT_3437 0.48 +0.9 106,614 - EX28DRAFT_3437 0.49 -2.3 106,658 + EX28DRAFT_3437 0.51 +0.3 106,658 + EX28DRAFT_3437 0.51 +0.5 106,865 - EX28DRAFT_3437 0.61 -0.5 106,895 + EX28DRAFT_3437 0.62 -0.1 107,044 - EX28DRAFT_3437 0.69 +0.2 107,044 - EX28DRAFT_3437 0.69 +0.3 107,044 - EX28DRAFT_3437 0.69 +0.3 107,133 + EX28DRAFT_3437 0.74 +0.8 107,134 - EX28DRAFT_3437 0.74 +0.7 107,279 + EX28DRAFT_3437 0.80 +0.2 107,280 - EX28DRAFT_3437 0.80 -2.2 107,456 + EX28DRAFT_3437 0.89 +0.2 107,456 + EX28DRAFT_3437 0.89 +0.2 107,457 - EX28DRAFT_3437 0.89 +0.1 107,478 - EX28DRAFT_3437 0.90 -2.4 107,744 + +0.6 107,745 - -1.5 107,745 - -3.7 107,757 + +0.2 107,758 - +0.2 107,758 - -0.3 107,822 + -0.2 107,823 - -0.3 107,856 - +0.6 107,860 - -0.5 107,893 + +0.6 107,897 + +0.2 107,898 - -0.1 107,898 - -1.9 107,898 - +0.1 107,898 - +0.0 107,948 + +0.4 107,963 - -0.5 108,160 + +1.1 108,348 + EX28DRAFT_3438 0.17 +0.0 108,349 - EX28DRAFT_3438 0.17 +0.3 108,349 - EX28DRAFT_3438 0.17 +0.4 108,399 + EX28DRAFT_3438 0.20 +0.0 108,400 - EX28DRAFT_3438 0.20 +1.0 108,400 - EX28DRAFT_3438 0.20 -0.5 108,640 + EX28DRAFT_3438 0.34 +0.4 108,643 - EX28DRAFT_3438 0.35 -0.6
Or see this region's nucleotide sequence