Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3392

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3391 and EX28DRAFT_3392 are separated by 96 nucleotidesEX28DRAFT_3392 and EX28DRAFT_3393 are separated by 244 nucleotides EX28DRAFT_3391: EX28DRAFT_3391 - Gamma-aminobutyrate permease and related permeases, at 58,145 to 59,554 _3391 EX28DRAFT_3392: EX28DRAFT_3392 - iron-sulfur cluster repair di-iron protein, at 59,651 to 60,313 _3392 EX28DRAFT_3393: EX28DRAFT_3393 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 60,558 to 62,207 _3393 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.735 kb on + strand, within EX28DRAFT_3391at 58.809 kb on + strand, within EX28DRAFT_3391at 58.809 kb on + strand, within EX28DRAFT_3391at 58.892 kb on - strand, within EX28DRAFT_3391at 58.910 kb on - strand, within EX28DRAFT_3391at 58.910 kb on - strand, within EX28DRAFT_3391at 58.922 kb on + strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.946 kb on - strand, within EX28DRAFT_3391at 58.946 kb on - strand, within EX28DRAFT_3391at 59.014 kb on - strand, within EX28DRAFT_3391at 59.041 kb on + strand, within EX28DRAFT_3391at 59.041 kb on + strand, within EX28DRAFT_3391at 59.042 kb on - strand, within EX28DRAFT_3391at 59.231 kb on + strand, within EX28DRAFT_3391at 59.232 kb on - strand, within EX28DRAFT_3391at 59.263 kb on + strand, within EX28DRAFT_3391at 59.294 kb on - strand, within EX28DRAFT_3391at 59.294 kb on - strand, within EX28DRAFT_3391at 59.334 kb on - strand, within EX28DRAFT_3391at 59.372 kb on + strand, within EX28DRAFT_3391at 59.372 kb on + strand, within EX28DRAFT_3391at 59.373 kb on - strand, within EX28DRAFT_3391at 59.536 kb on + strandat 59.553 kb on - strandat 59.553 kb on - strandat 59.663 kb on + strandat 59.723 kb on - strand, within EX28DRAFT_3392at 59.742 kb on + strand, within EX28DRAFT_3392at 59.743 kb on - strand, within EX28DRAFT_3392at 59.891 kb on + strand, within EX28DRAFT_3392at 59.892 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.961 kb on + strand, within EX28DRAFT_3392at 60.062 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.314 kb on - strandat 60.335 kb on - strandat 60.374 kb on + strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.451 kb on + strandat 60.451 kb on + strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.484 kb on - strandat 60.484 kb on - strandat 60.516 kb on + strandat 60.518 kb on + strandat 60.519 kb on - strandat 60.519 kb on - strandat 60.541 kb on + strandat 60.541 kb on + strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.543 kb on + strandat 60.543 kb on + strandat 60.544 kb on - strandat 60.544 kb on - strandat 60.569 kb on + strandat 60.570 kb on - strandat 60.570 kb on - strandat 60.571 kb on + strandat 60.875 kb on + strand, within EX28DRAFT_3393at 60.876 kb on - strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.883 kb on - strand, within EX28DRAFT_3393at 61.007 kb on + strand, within EX28DRAFT_3393at 61.123 kb on - strand, within EX28DRAFT_3393at 61.178 kb on + strand, within EX28DRAFT_3393at 61.292 kb on + strand, within EX28DRAFT_3393at 61.292 kb on + strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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58,735 + EX28DRAFT_3391 0.42 +1.1
58,809 + EX28DRAFT_3391 0.47 -0.5
58,809 + EX28DRAFT_3391 0.47 -0.3
58,892 - EX28DRAFT_3391 0.53 -0.4
58,910 - EX28DRAFT_3391 0.54 +0.0
58,910 - EX28DRAFT_3391 0.54 -0.2
58,922 + EX28DRAFT_3391 0.55 +0.3
58,923 - EX28DRAFT_3391 0.55 -0.1
58,923 - EX28DRAFT_3391 0.55 -3.0
58,923 - EX28DRAFT_3391 0.55 -0.4
58,923 - EX28DRAFT_3391 0.55 +0.1
58,946 - EX28DRAFT_3391 0.57 -0.1
58,946 - EX28DRAFT_3391 0.57 +1.2
59,014 - EX28DRAFT_3391 0.62 -0.2
59,041 + EX28DRAFT_3391 0.64 -1.1
59,041 + EX28DRAFT_3391 0.64 +0.0
59,042 - EX28DRAFT_3391 0.64 -1.0
59,231 + EX28DRAFT_3391 0.77 +1.9
59,232 - EX28DRAFT_3391 0.77 -0.2
59,263 + EX28DRAFT_3391 0.79 +0.5
59,294 - EX28DRAFT_3391 0.81 -0.6
59,294 - EX28DRAFT_3391 0.81 +1.3
59,334 - EX28DRAFT_3391 0.84 +0.4
59,372 + EX28DRAFT_3391 0.87 -0.5
59,372 + EX28DRAFT_3391 0.87 -2.1
59,373 - EX28DRAFT_3391 0.87 +0.3
59,536 + +0.2
59,553 - -0.5
59,553 - -2.0
59,663 + -0.1
59,723 - EX28DRAFT_3392 0.11 +0.0
59,742 + EX28DRAFT_3392 0.14 -1.4
59,743 - EX28DRAFT_3392 0.14 -0.5
59,891 + EX28DRAFT_3392 0.36 -2.0
59,892 - EX28DRAFT_3392 0.36 -1.5
59,927 - EX28DRAFT_3392 0.42 -0.7
59,927 - EX28DRAFT_3392 0.42 +0.7
59,961 + EX28DRAFT_3392 0.47 +0.2
60,062 - EX28DRAFT_3392 0.62 -0.8
60,241 - EX28DRAFT_3392 0.89 -2.2
60,241 - EX28DRAFT_3392 0.89 -0.5
60,314 - -0.9
60,335 - -3.7
60,374 + +0.4
60,375 - -0.6
60,375 - +0.0
60,375 - +0.6
60,451 + -1.2
60,451 + +0.7
60,452 - -0.3
60,452 - -0.4
60,452 - +1.0
60,484 - +0.4
60,484 - -0.1
60,516 + -0.1
60,518 + -1.1
60,519 - +0.0
60,519 - +0.1
60,541 + -0.4
60,541 + -0.5
60,542 - -3.5
60,542 - -0.5
60,542 - +0.4
60,542 - +1.6
60,543 + +0.0
60,543 + +0.1
60,544 - -1.5
60,544 - -0.4
60,569 + -1.1
60,570 - -2.2
60,570 - -0.8
60,571 + -0.3
60,875 + EX28DRAFT_3393 0.19 -0.7
60,876 - EX28DRAFT_3393 0.19 -0.9
60,879 + EX28DRAFT_3393 0.19 -0.5
60,879 + EX28DRAFT_3393 0.19 -2.8
60,879 + EX28DRAFT_3393 0.19 -0.8
60,880 - EX28DRAFT_3393 0.20 -0.4
60,880 - EX28DRAFT_3393 0.20 -0.8
60,880 - EX28DRAFT_3393 0.20 +0.2
60,880 - EX28DRAFT_3393 0.20 -0.5
60,880 - EX28DRAFT_3393 0.20 +0.4
60,880 - EX28DRAFT_3393 0.20 +0.3
60,880 - EX28DRAFT_3393 0.20 -0.4
60,882 + EX28DRAFT_3393 0.20 -0.7
60,882 + EX28DRAFT_3393 0.20 +1.3
60,882 + EX28DRAFT_3393 0.20 +0.4
60,882 + EX28DRAFT_3393 0.20 +0.6
60,882 + EX28DRAFT_3393 0.20 +0.4
60,882 + EX28DRAFT_3393 0.20 +0.4
60,883 - EX28DRAFT_3393 0.20 +0.6
61,007 + EX28DRAFT_3393 0.27 +0.6
61,123 - EX28DRAFT_3393 0.34 -0.2
61,178 + EX28DRAFT_3393 0.38 -0.5
61,292 + EX28DRAFT_3393 0.44 -1.5
61,292 + EX28DRAFT_3393 0.44 -0.7
61,293 - EX28DRAFT_3393 0.45 +0.3
61,293 - EX28DRAFT_3393 0.45 -0.2
61,293 - EX28DRAFT_3393 0.45 -0.2

Or see this region's nucleotide sequence