Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3191 and EX28DRAFT_3192 are separated by 246 nucleotides EX28DRAFT_3192 and EX28DRAFT_3193 are separated by 12 nucleotides EX28DRAFT_3193 and EX28DRAFT_3194 are separated by 20 nucleotides
EX28DRAFT_3191: EX28DRAFT_3191 - N-acetylglucosamine-6-phosphate deacetylase, at 491,009 to 492,142
_3191
EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537
_3192
EX28DRAFT_3193: EX28DRAFT_3193 - class II aldolase, tagatose bisphosphate family, at 493,550 to 494,422
_3193
EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332
_3194
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.562 kb on + strand, within EX28DRAFT_3191 at 491.648 kb on + strand, within EX28DRAFT_3191 at 491.772 kb on + strand, within EX28DRAFT_3191 at 491.773 kb on - strand, within EX28DRAFT_3191 at 491.833 kb on + strand, within EX28DRAFT_3191 at 491.850 kb on - strand, within EX28DRAFT_3191 at 491.851 kb on + strand, within EX28DRAFT_3191 at 491.852 kb on - strand, within EX28DRAFT_3191 at 491.953 kb on + strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 492.096 kb on + strand at 492.097 kb on - strand at 492.388 kb on + strand at 492.675 kb on - strand, within EX28DRAFT_3192 at 492.782 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.821 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.155 kb on - strand, within EX28DRAFT_3192 at 493.226 kb on - strand, within EX28DRAFT_3192 at 493.243 kb on + strand, within EX28DRAFT_3192 at 493.244 kb on - strand, within EX28DRAFT_3192 at 493.253 kb on + strand, within EX28DRAFT_3192 at 493.415 kb on + strand, within EX28DRAFT_3192 at 493.416 kb on - strand, within EX28DRAFT_3192 at 493.416 kb on - strand, within EX28DRAFT_3192 at 493.452 kb on + strand at 493.459 kb on + strand at 493.535 kb on + strand at 493.549 kb on + strand at 493.550 kb on - strand at 493.550 kb on - strand at 493.555 kb on + strand at 493.555 kb on + strand at 493.555 kb on + strand at 493.556 kb on - strand at 493.558 kb on + strand at 493.558 kb on + strand at 493.559 kb on - strand at 493.571 kb on + strand at 493.572 kb on - strand at 493.572 kb on - strand at 493.712 kb on - strand, within EX28DRAFT_3193 at 493.718 kb on - strand, within EX28DRAFT_3193 at 493.718 kb on - strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 494.099 kb on - strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.436 kb on + strand at 494.436 kb on + strand at 494.529 kb on + strand at 494.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 491,390 + EX28DRAFT_3191 0.34 +0.5 491,390 + EX28DRAFT_3191 0.34 -0.1 491,467 - EX28DRAFT_3191 0.40 +0.3 491,467 - EX28DRAFT_3191 0.40 -0.5 491,549 - EX28DRAFT_3191 0.48 -0.6 491,549 - EX28DRAFT_3191 0.48 +0.6 491,549 - EX28DRAFT_3191 0.48 -0.0 491,562 + EX28DRAFT_3191 0.49 +0.7 491,648 + EX28DRAFT_3191 0.56 +0.4 491,772 + EX28DRAFT_3191 0.67 -0.2 491,773 - EX28DRAFT_3191 0.67 -0.2 491,833 + EX28DRAFT_3191 0.73 +1.1 491,850 - EX28DRAFT_3191 0.74 -0.1 491,851 + EX28DRAFT_3191 0.74 +0.0 491,852 - EX28DRAFT_3191 0.74 +0.3 491,953 + EX28DRAFT_3191 0.83 -0.1 491,954 - EX28DRAFT_3191 0.83 +0.2 491,954 - EX28DRAFT_3191 0.83 -0.3 492,096 + -0.1 492,097 - -0.5 492,388 + +0.0 492,675 - EX28DRAFT_3192 0.25 +0.6 492,782 + EX28DRAFT_3192 0.34 -0.7 492,796 + EX28DRAFT_3192 0.35 +0.5 492,796 + EX28DRAFT_3192 0.35 +0.3 492,821 + EX28DRAFT_3192 0.38 +0.6 493,067 + EX28DRAFT_3192 0.59 -0.3 493,067 + EX28DRAFT_3192 0.59 +0.3 493,155 - EX28DRAFT_3192 0.67 +2.0 493,226 - EX28DRAFT_3192 0.73 +0.4 493,243 + EX28DRAFT_3192 0.74 -1.1 493,244 - EX28DRAFT_3192 0.74 +0.5 493,253 + EX28DRAFT_3192 0.75 +0.1 493,415 + EX28DRAFT_3192 0.89 +0.2 493,416 - EX28DRAFT_3192 0.89 -2.6 493,416 - EX28DRAFT_3192 0.89 -0.7 493,452 + +0.5 493,459 + +0.3 493,535 + -1.6 493,549 + +0.0 493,550 - -0.7 493,550 - -0.9 493,555 + -0.4 493,555 + -0.6 493,555 + +0.7 493,556 - -0.8 493,558 + +0.2 493,558 + -0.4 493,559 - +0.1 493,571 + +0.9 493,572 - -1.5 493,572 - +0.4 493,712 - EX28DRAFT_3193 0.19 +0.1 493,718 - EX28DRAFT_3193 0.19 +1.1 493,718 - EX28DRAFT_3193 0.19 -0.3 493,736 + EX28DRAFT_3193 0.21 +0.2 493,736 + EX28DRAFT_3193 0.21 +0.5 493,736 + EX28DRAFT_3193 0.21 -0.8 494,099 - EX28DRAFT_3193 0.63 -0.9 494,324 + EX28DRAFT_3193 0.89 -0.6 494,324 + EX28DRAFT_3193 0.89 +1.0 494,324 + EX28DRAFT_3193 0.89 -0.1 494,324 + EX28DRAFT_3193 0.89 -0.3 494,324 + EX28DRAFT_3193 0.89 +0.7 494,325 - EX28DRAFT_3193 0.89 +1.4 494,325 - EX28DRAFT_3193 0.89 +0.1 494,325 - EX28DRAFT_3193 0.89 -0.5 494,436 + +0.5 494,436 + +1.9 494,529 + +0.3 494,530 - -0.1
Or see this region's nucleotide sequence