Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3163

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3162 and EX28DRAFT_3163 are separated by 344 nucleotidesEX28DRAFT_3163 and EX28DRAFT_3164 are separated by 2 nucleotidesEX28DRAFT_3164 and EX28DRAFT_3165 are separated by 142 nucleotidesEX28DRAFT_3165 and EX28DRAFT_3166 are separated by 31 nucleotides EX28DRAFT_3162: EX28DRAFT_3162 - Transcriptional regulators, at 466,052 to 466,828 _3162 EX28DRAFT_3163: EX28DRAFT_3163 - Uncharacterized membrane-associated protein, at 467,173 to 467,835 _3163 EX28DRAFT_3164: EX28DRAFT_3164 - SecD export protein N-terminal TM region, at 467,838 to 468,221 _3164 EX28DRAFT_3165: EX28DRAFT_3165 - Protein of unknown function (DUF1090), at 468,364 to 468,732 _3165 EX28DRAFT_3166: EX28DRAFT_3166 - Uncharacterized conserved protein, at 468,764 to 469,069 _3166 Position (kb) 467 468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 466.210 kb on + strand, within EX28DRAFT_3162at 466.210 kb on + strand, within EX28DRAFT_3162at 466.326 kb on - strand, within EX28DRAFT_3162at 466.373 kb on - strand, within EX28DRAFT_3162at 466.663 kb on + strand, within EX28DRAFT_3162at 466.827 kb on - strandat 466.890 kb on + strandat 466.890 kb on + strandat 466.891 kb on - strandat 466.891 kb on - strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.895 kb on - strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.910 kb on - strandat 466.910 kb on - strandat 467.046 kb on + strandat 467.192 kb on + strandat 467.192 kb on + strandat 467.193 kb on - strandat 467.193 kb on - strandat 467.257 kb on + strand, within EX28DRAFT_3163at 467.257 kb on + strand, within EX28DRAFT_3163at 467.258 kb on - strand, within EX28DRAFT_3163at 467.258 kb on - strand, within EX28DRAFT_3163at 467.271 kb on + strand, within EX28DRAFT_3163at 467.272 kb on - strand, within EX28DRAFT_3163at 467.390 kb on + strand, within EX28DRAFT_3163at 467.391 kb on - strand, within EX28DRAFT_3163at 467.391 kb on - strand, within EX28DRAFT_3163at 467.431 kb on + strand, within EX28DRAFT_3163at 467.431 kb on + strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.690 kb on - strand, within EX28DRAFT_3163at 467.722 kb on + strand, within EX28DRAFT_3163at 467.722 kb on + strand, within EX28DRAFT_3163at 467.723 kb on - strand, within EX28DRAFT_3163at 467.843 kb on + strandat 467.886 kb on - strand, within EX28DRAFT_3164at 467.984 kb on - strand, within EX28DRAFT_3164at 467.984 kb on - strand, within EX28DRAFT_3164at 468.065 kb on - strand, within EX28DRAFT_3164at 468.138 kb on + strand, within EX28DRAFT_3164at 468.139 kb on - strand, within EX28DRAFT_3164at 468.140 kb on + strand, within EX28DRAFT_3164at 468.140 kb on + strand, within EX28DRAFT_3164at 468.141 kb on - strand, within EX28DRAFT_3164at 468.141 kb on - strand, within EX28DRAFT_3164at 468.220 kb on - strandat 468.269 kb on + strandat 468.269 kb on + strandat 468.270 kb on - strandat 468.273 kb on + strandat 468.273 kb on + strandat 468.274 kb on - strandat 468.274 kb on - strandat 468.276 kb on + strandat 468.276 kb on + strandat 468.277 kb on - strandat 468.282 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strandat 468.283 kb on - strandat 468.283 kb on - strandat 468.404 kb on + strand, within EX28DRAFT_3165at 468.472 kb on + strand, within EX28DRAFT_3165at 468.486 kb on + strand, within EX28DRAFT_3165at 468.513 kb on + strand, within EX28DRAFT_3165

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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466,210 + EX28DRAFT_3162 0.20 -4.0
466,210 + EX28DRAFT_3162 0.20 +0.5
466,326 - EX28DRAFT_3162 0.35 -2.3
466,373 - EX28DRAFT_3162 0.41 +0.4
466,663 + EX28DRAFT_3162 0.79 +0.1
466,827 - +0.4
466,890 + +0.5
466,890 + -0.3
466,891 - +0.5
466,891 - +0.3
466,892 + +0.3
466,892 + -0.3
466,892 + +0.7
466,893 - +0.9
466,893 - -0.4
466,893 - +0.7
466,894 + -3.4
466,894 + +0.1
466,894 + -0.5
466,895 - +0.6
466,909 + +0.0
466,909 + -0.1
466,909 + -0.9
466,910 - +0.5
466,910 - +0.3
467,046 + +0.9
467,192 + +0.8
467,192 + -0.2
467,193 - +0.5
467,193 - +0.8
467,257 + EX28DRAFT_3163 0.13 -0.3
467,257 + EX28DRAFT_3163 0.13 +0.6
467,258 - EX28DRAFT_3163 0.13 +0.3
467,258 - EX28DRAFT_3163 0.13 +0.2
467,271 + EX28DRAFT_3163 0.15 +0.3
467,272 - EX28DRAFT_3163 0.15 +0.8
467,390 + EX28DRAFT_3163 0.33 +0.4
467,391 - EX28DRAFT_3163 0.33 +0.2
467,391 - EX28DRAFT_3163 0.33 +1.4
467,431 + EX28DRAFT_3163 0.39 +0.9
467,431 + EX28DRAFT_3163 0.39 +0.6
467,432 - EX28DRAFT_3163 0.39 -1.1
467,432 - EX28DRAFT_3163 0.39 +0.1
467,432 - EX28DRAFT_3163 0.39 -1.3
467,432 - EX28DRAFT_3163 0.39 +0.7
467,432 - EX28DRAFT_3163 0.39 +2.1
467,432 - EX28DRAFT_3163 0.39 -0.1
467,661 - EX28DRAFT_3163 0.74 +0.7
467,661 - EX28DRAFT_3163 0.74 +0.2
467,661 - EX28DRAFT_3163 0.74 -0.2
467,690 - EX28DRAFT_3163 0.78 +0.5
467,722 + EX28DRAFT_3163 0.83 +0.4
467,722 + EX28DRAFT_3163 0.83 +2.5
467,723 - EX28DRAFT_3163 0.83 -0.2
467,843 + -0.0
467,886 - EX28DRAFT_3164 0.12 -0.7
467,984 - EX28DRAFT_3164 0.38 -0.4
467,984 - EX28DRAFT_3164 0.38 +0.4
468,065 - EX28DRAFT_3164 0.59 -0.6
468,138 + EX28DRAFT_3164 0.78 -0.1
468,139 - EX28DRAFT_3164 0.78 -2.2
468,140 + EX28DRAFT_3164 0.79 +0.0
468,140 + EX28DRAFT_3164 0.79 -0.1
468,141 - EX28DRAFT_3164 0.79 +0.3
468,141 - EX28DRAFT_3164 0.79 +0.2
468,220 - -0.5
468,269 + -0.8
468,269 + -0.5
468,270 - +0.2
468,273 + +0.0
468,273 + +1.6
468,274 - +0.2
468,274 - -0.1
468,276 + -0.3
468,276 + -0.6
468,277 - -0.8
468,282 + -0.9
468,282 + +0.1
468,282 + +0.1
468,282 + +0.6
468,283 - -0.3
468,283 - +0.4
468,404 + EX28DRAFT_3165 0.11 -0.5
468,472 + EX28DRAFT_3165 0.29 +0.3
468,486 + EX28DRAFT_3165 0.33 -1.4
468,513 + EX28DRAFT_3165 0.40 -0.7

Or see this region's nucleotide sequence