Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3090 and EX28DRAFT_3091 are separated by 145 nucleotides EX28DRAFT_3091 and EX28DRAFT_3092 are separated by 10 nucleotides EX28DRAFT_3092 and EX28DRAFT_3093 are separated by 10 nucleotides EX28DRAFT_3093 and EX28DRAFT_3094 overlap by 8 nucleotides
EX28DRAFT_3090: EX28DRAFT_3090 - Esterase/lipase, at 401,852 to 402,865
_3090
EX28DRAFT_3091: EX28DRAFT_3091 - Urease accessory protein UreH, at 403,011 to 403,838
_3091
EX28DRAFT_3092: EX28DRAFT_3092 - urease, gamma subunit, at 403,849 to 404,151
_3092
EX28DRAFT_3093: EX28DRAFT_3093 - urease, beta subunit, at 404,162 to 404,476
_3093
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.157 kb on + strand, within EX28DRAFT_3090 at 402.158 kb on - strand, within EX28DRAFT_3090 at 402.301 kb on + strand, within EX28DRAFT_3090 at 402.499 kb on + strand, within EX28DRAFT_3090 at 402.509 kb on + strand, within EX28DRAFT_3090 at 402.510 kb on - strand, within EX28DRAFT_3090 at 402.530 kb on + strand, within EX28DRAFT_3090 at 402.572 kb on + strand, within EX28DRAFT_3090 at 402.573 kb on - strand, within EX28DRAFT_3090 at 402.602 kb on - strand, within EX28DRAFT_3090 at 402.715 kb on + strand, within EX28DRAFT_3090 at 402.715 kb on + strand, within EX28DRAFT_3090 at 402.879 kb on + strand at 402.881 kb on + strand at 402.882 kb on - strand at 402.882 kb on - strand at 402.882 kb on - strand at 402.944 kb on + strand at 402.944 kb on + strand at 403.034 kb on + strand at 403.037 kb on + strand at 403.038 kb on - strand at 403.038 kb on - strand at 403.041 kb on + strand at 403.041 kb on + strand at 403.042 kb on - strand at 403.042 kb on - strand at 403.176 kb on + strand, within EX28DRAFT_3091 at 403.177 kb on - strand, within EX28DRAFT_3091 at 403.528 kb on + strand, within EX28DRAFT_3091 at 403.529 kb on - strand, within EX28DRAFT_3091 at 403.623 kb on + strand, within EX28DRAFT_3091 at 403.624 kb on - strand, within EX28DRAFT_3091 at 403.836 kb on + strand at 403.836 kb on + strand at 403.837 kb on - strand at 403.837 kb on - strand at 403.942 kb on + strand, within EX28DRAFT_3092 at 404.288 kb on + strand, within EX28DRAFT_3093 at 404.289 kb on - strand, within EX28DRAFT_3093 at 404.451 kb on + strand at 404.477 kb on + strand at 404.494 kb on - strand at 404.502 kb on - strand at 404.502 kb on - strand at 404.525 kb on + strand at 404.526 kb on - strand at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.666 kb on - strand, within EX28DRAFT_3094
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 402,157 + EX28DRAFT_3090 0.30 -0.7 402,158 - EX28DRAFT_3090 0.30 -0.2 402,301 + EX28DRAFT_3090 0.44 +1.0 402,499 + EX28DRAFT_3090 0.64 -1.6 402,509 + EX28DRAFT_3090 0.65 +0.2 402,510 - EX28DRAFT_3090 0.65 +1.0 402,530 + EX28DRAFT_3090 0.67 +0.0 402,572 + EX28DRAFT_3090 0.71 -0.3 402,573 - EX28DRAFT_3090 0.71 -0.1 402,602 - EX28DRAFT_3090 0.74 -1.2 402,715 + EX28DRAFT_3090 0.85 +2.0 402,715 + EX28DRAFT_3090 0.85 -0.1 402,879 + +0.2 402,881 + +0.1 402,882 - +0.1 402,882 - -0.2 402,882 - -1.2 402,944 + -1.0 402,944 + +0.1 403,034 + -0.1 403,037 + +0.1 403,038 - +1.1 403,038 - +0.5 403,041 + -1.8 403,041 + -0.2 403,042 - +0.4 403,042 - -1.2 403,176 + EX28DRAFT_3091 0.20 -0.6 403,177 - EX28DRAFT_3091 0.20 -0.5 403,528 + EX28DRAFT_3091 0.62 -0.9 403,529 - EX28DRAFT_3091 0.63 -1.0 403,623 + EX28DRAFT_3091 0.74 -1.8 403,624 - EX28DRAFT_3091 0.74 -2.2 403,836 + -0.6 403,836 + +0.2 403,837 - -0.0 403,837 - -0.6 403,942 + EX28DRAFT_3092 0.31 -1.6 404,288 + EX28DRAFT_3093 0.40 -0.2 404,289 - EX28DRAFT_3093 0.40 -0.6 404,451 + +0.5 404,477 + +0.1 404,494 - +0.1 404,502 - +2.1 404,502 - +0.5 404,525 + -0.1 404,526 - -0.1 404,665 + EX28DRAFT_3094 0.12 +0.6 404,665 + EX28DRAFT_3094 0.12 -1.1 404,665 + EX28DRAFT_3094 0.12 +0.7 404,665 + EX28DRAFT_3094 0.12 -0.3 404,665 + EX28DRAFT_3094 0.12 +0.1 404,666 - EX28DRAFT_3094 0.12 -0.6
Or see this region's nucleotide sequence