Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3018

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3017 and EX28DRAFT_3018 are separated by 622 nucleotidesEX28DRAFT_3018 and EX28DRAFT_3019 are separated by 8 nucleotides EX28DRAFT_3017: EX28DRAFT_3017 - Bacterial regulatory proteins, luxR family, at 325,032 to 325,610 _3017 EX28DRAFT_3018: EX28DRAFT_3018 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 326,233 to 328,671 _3018 EX28DRAFT_3019: EX28DRAFT_3019 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 328,680 to 330,617 _3019 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1at 325.236 kb on - strand, within EX28DRAFT_3017at 325.248 kb on - strand, within EX28DRAFT_3017at 325.303 kb on - strand, within EX28DRAFT_3017at 325.344 kb on + strand, within EX28DRAFT_3017at 325.344 kb on + strand, within EX28DRAFT_3017at 325.345 kb on - strand, within EX28DRAFT_3017at 325.352 kb on + strand, within EX28DRAFT_3017at 325.438 kb on + strand, within EX28DRAFT_3017at 325.438 kb on + strand, within EX28DRAFT_3017at 325.445 kb on - strand, within EX28DRAFT_3017at 325.446 kb on + strand, within EX28DRAFT_3017at 325.506 kb on + strand, within EX28DRAFT_3017at 325.506 kb on + strand, within EX28DRAFT_3017at 326.488 kb on - strand, within EX28DRAFT_3018at 326.515 kb on + strand, within EX28DRAFT_3018at 326.515 kb on + strand, within EX28DRAFT_3018at 326.518 kb on - strand, within EX28DRAFT_3018at 326.755 kb on + strand, within EX28DRAFT_3018at 326.756 kb on - strand, within EX28DRAFT_3018at 326.913 kb on - strand, within EX28DRAFT_3018at 326.913 kb on - strand, within EX28DRAFT_3018at 327.229 kb on + strand, within EX28DRAFT_3018at 327.287 kb on - strand, within EX28DRAFT_3018at 327.326 kb on - strand, within EX28DRAFT_3018at 327.368 kb on - strand, within EX28DRAFT_3018at 327.475 kb on + strand, within EX28DRAFT_3018at 327.475 kb on + strand, within EX28DRAFT_3018at 327.476 kb on - strand, within EX28DRAFT_3018at 327.558 kb on - strand, within EX28DRAFT_3018at 327.579 kb on - strand, within EX28DRAFT_3018at 327.659 kb on + strand, within EX28DRAFT_3018at 327.660 kb on - strand, within EX28DRAFT_3018at 327.660 kb on - strand, within EX28DRAFT_3018at 327.677 kb on - strand, within EX28DRAFT_3018at 328.087 kb on + strand, within EX28DRAFT_3018at 328.087 kb on + strand, within EX28DRAFT_3018at 328.228 kb on + strand, within EX28DRAFT_3018at 328.266 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.282 kb on + strand, within EX28DRAFT_3018at 328.283 kb on - strand, within EX28DRAFT_3018at 328.283 kb on - strand, within EX28DRAFT_3018at 328.385 kb on - strand, within EX28DRAFT_3018at 328.387 kb on + strand, within EX28DRAFT_3018at 328.445 kb on - strandat 328.445 kb on - strandat 328.499 kb on - strandat 328.572 kb on + strandat 328.572 kb on + strandat 328.669 kb on + strandat 328.670 kb on - strandat 328.670 kb on - strandat 328.679 kb on + strandat 328.680 kb on - strandat 328.802 kb on + strandat 328.876 kb on - strand, within EX28DRAFT_3019at 328.912 kb on + strand, within EX28DRAFT_3019at 328.913 kb on - strand, within EX28DRAFT_3019at 329.231 kb on + strand, within EX28DRAFT_3019at 329.232 kb on - strand, within EX28DRAFT_3019at 329.304 kb on + strand, within EX28DRAFT_3019at 329.321 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.325 kb on + strand, within EX28DRAFT_3019at 329.326 kb on - strand, within EX28DRAFT_3019at 329.450 kb on + strand, within EX28DRAFT_3019at 329.647 kb on - strand, within EX28DRAFT_3019at 329.652 kb on + strand, within EX28DRAFT_3019

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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325,236 - EX28DRAFT_3017 0.35 +0.4
325,248 - EX28DRAFT_3017 0.37 -0.1
325,303 - EX28DRAFT_3017 0.47 +0.2
325,344 + EX28DRAFT_3017 0.54 +0.2
325,344 + EX28DRAFT_3017 0.54 -2.1
325,345 - EX28DRAFT_3017 0.54 +0.4
325,352 + EX28DRAFT_3017 0.55 -0.7
325,438 + EX28DRAFT_3017 0.70 -0.4
325,438 + EX28DRAFT_3017 0.70 -0.4
325,445 - EX28DRAFT_3017 0.71 -0.3
325,446 + EX28DRAFT_3017 0.72 -0.0
325,506 + EX28DRAFT_3017 0.82 -1.2
325,506 + EX28DRAFT_3017 0.82 -0.4
326,488 - EX28DRAFT_3018 0.10 -3.3
326,515 + EX28DRAFT_3018 0.12 +0.3
326,515 + EX28DRAFT_3018 0.12 +1.3
326,518 - EX28DRAFT_3018 0.12 -0.0
326,755 + EX28DRAFT_3018 0.21 +0.3
326,756 - EX28DRAFT_3018 0.21 +0.0
326,913 - EX28DRAFT_3018 0.28 +1.0
326,913 - EX28DRAFT_3018 0.28 -1.2
327,229 + EX28DRAFT_3018 0.41 -1.2
327,287 - EX28DRAFT_3018 0.43 -0.6
327,326 - EX28DRAFT_3018 0.45 +0.4
327,368 - EX28DRAFT_3018 0.47 -1.3
327,475 + EX28DRAFT_3018 0.51 -0.9
327,475 + EX28DRAFT_3018 0.51 -0.2
327,476 - EX28DRAFT_3018 0.51 -0.5
327,558 - EX28DRAFT_3018 0.54 +0.3
327,579 - EX28DRAFT_3018 0.55 -0.4
327,659 + EX28DRAFT_3018 0.58 -2.5
327,660 - EX28DRAFT_3018 0.59 -0.0
327,660 - EX28DRAFT_3018 0.59 -0.4
327,677 - EX28DRAFT_3018 0.59 +1.2
328,087 + EX28DRAFT_3018 0.76 -1.2
328,087 + EX28DRAFT_3018 0.76 -0.6
328,228 + EX28DRAFT_3018 0.82 +0.2
328,266 + EX28DRAFT_3018 0.83 -1.4
328,282 + EX28DRAFT_3018 0.84 +0.6
328,282 + EX28DRAFT_3018 0.84 +0.1
328,282 + EX28DRAFT_3018 0.84 -0.1
328,282 + EX28DRAFT_3018 0.84 -0.1
328,282 + EX28DRAFT_3018 0.84 +0.1
328,283 - EX28DRAFT_3018 0.84 -0.5
328,283 - EX28DRAFT_3018 0.84 +0.4
328,385 - EX28DRAFT_3018 0.88 -1.1
328,387 + EX28DRAFT_3018 0.88 +1.2
328,445 - +0.4
328,445 - -3.5
328,499 - -0.5
328,572 + -1.5
328,572 + -0.6
328,669 + -0.5
328,670 - +0.2
328,670 - -0.8
328,679 + +0.9
328,680 - +0.4
328,802 + -1.0
328,876 - EX28DRAFT_3019 0.10 -0.3
328,912 + EX28DRAFT_3019 0.12 -1.2
328,913 - EX28DRAFT_3019 0.12 +0.5
329,231 + EX28DRAFT_3019 0.28 +0.8
329,232 - EX28DRAFT_3019 0.28 +0.1
329,304 + EX28DRAFT_3019 0.32 +0.7
329,321 + EX28DRAFT_3019 0.33 +0.9
329,325 + EX28DRAFT_3019 0.33 -0.8
329,325 + EX28DRAFT_3019 0.33 +0.4
329,325 + EX28DRAFT_3019 0.33 -1.6
329,326 - EX28DRAFT_3019 0.33 +0.1
329,450 + EX28DRAFT_3019 0.40 -0.2
329,647 - EX28DRAFT_3019 0.50 -0.2
329,652 + EX28DRAFT_3019 0.50 -0.3

Or see this region's nucleotide sequence