Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2986 and EX28DRAFT_2987 overlap by 1 nucleotides EX28DRAFT_2987 and EX28DRAFT_2988 are separated by 10 nucleotides EX28DRAFT_2988 and EX28DRAFT_2989 are separated by 17 nucleotides EX28DRAFT_2989 and EX28DRAFT_2990 are separated by 21 nucleotides
EX28DRAFT_2986: EX28DRAFT_2986 - Putative transcriptional regulator, at 298,827 to 299,387
_2986
EX28DRAFT_2987: EX28DRAFT_2987 - RNAse H-fold protein YqgF, at 299,387 to 299,803
_2987
EX28DRAFT_2988: EX28DRAFT_2988 - pilus retraction protein PilT, at 299,814 to 300,794
_2988
EX28DRAFT_2989: EX28DRAFT_2989 - pyridoxal phosphate enzyme, YggS family, at 300,812 to 301,513
_2989
EX28DRAFT_2990: EX28DRAFT_2990 - Predicted integral membrane protein, at 301,535 to 302,101
_2990
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.899 kb on + strand, within EX28DRAFT_2986 at 298.911 kb on + strand, within EX28DRAFT_2986 at 299.098 kb on + strand, within EX28DRAFT_2986 at 299.111 kb on + strand, within EX28DRAFT_2986 at 299.211 kb on + strand, within EX28DRAFT_2986 at 299.815 kb on + strand at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.966 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.311 kb on + strand, within EX28DRAFT_2988 at 300.312 kb on - strand, within EX28DRAFT_2988 at 300.342 kb on - strand, within EX28DRAFT_2988 at 300.390 kb on - strand, within EX28DRAFT_2988 at 300.639 kb on - strand, within EX28DRAFT_2988 at 300.651 kb on + strand, within EX28DRAFT_2988 at 300.651 kb on + strand, within EX28DRAFT_2988 at 300.741 kb on + strand at 300.742 kb on - strand at 300.756 kb on - strand at 300.762 kb on + strand at 300.767 kb on + strand at 300.768 kb on - strand at 300.795 kb on - strand at 300.795 kb on - strand at 300.799 kb on + strand at 300.799 kb on + strand at 300.800 kb on - strand at 300.949 kb on + strand, within EX28DRAFT_2989 at 300.949 kb on + strand, within EX28DRAFT_2989 at 300.984 kb on - strand, within EX28DRAFT_2989 at 300.984 kb on - strand, within EX28DRAFT_2989 at 301.180 kb on + strand, within EX28DRAFT_2989 at 301.329 kb on - strand, within EX28DRAFT_2989 at 301.365 kb on + strand, within EX28DRAFT_2989 at 301.381 kb on + strand, within EX28DRAFT_2989 at 301.382 kb on - strand, within EX28DRAFT_2989 at 301.393 kb on + strand, within EX28DRAFT_2989 at 301.393 kb on + strand, within EX28DRAFT_2989 at 301.401 kb on + strand, within EX28DRAFT_2989 at 301.432 kb on + strand, within EX28DRAFT_2989 at 301.462 kb on + strand at 301.511 kb on + strand at 301.512 kb on - strand at 301.514 kb on + strand at 301.515 kb on - strand at 301.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 298,816 + +2.0 298,816 + -0.2 298,816 + -0.2 298,816 + -0.0 298,816 + -0.3 298,899 + EX28DRAFT_2986 0.13 +0.2 298,911 + EX28DRAFT_2986 0.15 +0.2 299,098 + EX28DRAFT_2986 0.48 -0.7 299,111 + EX28DRAFT_2986 0.51 -2.6 299,211 + EX28DRAFT_2986 0.68 +0.5 299,815 + -1.0 299,965 + EX28DRAFT_2988 0.15 -1.5 299,965 + EX28DRAFT_2988 0.15 +0.7 299,965 + EX28DRAFT_2988 0.15 +1.6 299,966 - EX28DRAFT_2988 0.15 +0.5 300,308 - EX28DRAFT_2988 0.50 +0.7 300,308 - EX28DRAFT_2988 0.50 +0.6 300,311 + EX28DRAFT_2988 0.51 +0.2 300,312 - EX28DRAFT_2988 0.51 +0.2 300,342 - EX28DRAFT_2988 0.54 -0.7 300,390 - EX28DRAFT_2988 0.59 -0.0 300,639 - EX28DRAFT_2988 0.84 -0.3 300,651 + EX28DRAFT_2988 0.85 -1.0 300,651 + EX28DRAFT_2988 0.85 +0.3 300,741 + +0.1 300,742 - +1.0 300,756 - -0.4 300,762 + +0.8 300,767 + +0.4 300,768 - -0.1 300,795 - +0.1 300,795 - +0.9 300,799 + +0.2 300,799 + +0.2 300,800 - +0.1 300,949 + EX28DRAFT_2989 0.20 -0.3 300,949 + EX28DRAFT_2989 0.20 +0.6 300,984 - EX28DRAFT_2989 0.25 +0.6 300,984 - EX28DRAFT_2989 0.25 -0.7 301,180 + EX28DRAFT_2989 0.52 +0.8 301,329 - EX28DRAFT_2989 0.74 -0.9 301,365 + EX28DRAFT_2989 0.79 +0.4 301,381 + EX28DRAFT_2989 0.81 +0.0 301,382 - EX28DRAFT_2989 0.81 +1.3 301,393 + EX28DRAFT_2989 0.83 -0.1 301,393 + EX28DRAFT_2989 0.83 +0.3 301,401 + EX28DRAFT_2989 0.84 -1.3 301,432 + EX28DRAFT_2989 0.88 +0.4 301,462 + -2.2 301,511 + +0.1 301,512 - +0.1 301,514 + -0.3 301,515 - -0.4 301,579 + -0.2
Or see this region's nucleotide sequence