Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2883 and EX28DRAFT_2884 are separated by 128 nucleotides EX28DRAFT_2884 and EX28DRAFT_2885 are separated by 13 nucleotides EX28DRAFT_2885 and EX28DRAFT_2886 are separated by 192 nucleotides
EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703
_2883
EX28DRAFT_2884: EX28DRAFT_2884 - RNA, at 190,832 to 191,039
_2884
EX28DRAFT_2885: EX28DRAFT_2885 - Bacterial protein of unknown function (DUF903), at 191,053 to 191,280
_2885
EX28DRAFT_2886: EX28DRAFT_2886 - cysteine desulfurase, catalytic subunit CsdA, at 191,473 to 192,678
_2886
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.867 kb on - strand at 189.901 kb on + strand, within EX28DRAFT_2883 at 189.902 kb on - strand, within EX28DRAFT_2883 at 189.924 kb on + strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.933 kb on - strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.083 kb on + strand, within EX28DRAFT_2883 at 190.084 kb on - strand, within EX28DRAFT_2883 at 190.182 kb on + strand, within EX28DRAFT_2883 at 190.222 kb on + strand, within EX28DRAFT_2883 at 190.635 kb on - strand at 190.806 kb on + strand at 190.806 kb on + strand at 190.816 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.821 kb on - strand at 190.822 kb on + strand at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.984 kb on - strand, within EX28DRAFT_2884 at 191.005 kb on + strand, within EX28DRAFT_2884 at 191.010 kb on + strand, within EX28DRAFT_2884 at 191.011 kb on - strand, within EX28DRAFT_2884 at 191.179 kb on - strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.275 kb on - strand at 191.285 kb on - strand at 191.357 kb on - strand at 191.382 kb on + strand at 191.409 kb on + strand at 191.409 kb on + strand at 191.410 kb on - strand at 191.452 kb on + strand at 191.453 kb on - strand at 191.453 kb on - strand at 191.454 kb on + strand at 191.537 kb on - strand at 191.537 kb on - strand at 191.600 kb on - strand, within EX28DRAFT_2886 at 191.757 kb on + strand, within EX28DRAFT_2886 at 191.757 kb on + strand, within EX28DRAFT_2886
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 189,867 - +0.8 189,901 + EX28DRAFT_2883 0.13 -1.1 189,902 - EX28DRAFT_2883 0.13 -0.1 189,924 + EX28DRAFT_2883 0.15 +0.1 189,925 - EX28DRAFT_2883 0.15 +0.5 189,925 - EX28DRAFT_2883 0.15 -0.1 189,933 - EX28DRAFT_2883 0.16 -0.0 190,070 + EX28DRAFT_2883 0.31 -1.7 190,070 + EX28DRAFT_2883 0.31 +0.6 190,083 + EX28DRAFT_2883 0.32 -0.4 190,084 - EX28DRAFT_2883 0.32 -0.1 190,182 + EX28DRAFT_2883 0.43 +1.0 190,222 + EX28DRAFT_2883 0.47 +0.5 190,635 - +0.6 190,806 + -0.1 190,806 + -1.4 190,816 + +0.8 190,820 + -0.3 190,820 + +0.9 190,820 + +0.6 190,820 + -0.4 190,820 + +0.8 190,821 - +0.5 190,822 + -0.5 190,983 + EX28DRAFT_2884 0.73 +0.2 190,983 + EX28DRAFT_2884 0.73 -1.0 190,984 - EX28DRAFT_2884 0.73 -0.8 191,005 + EX28DRAFT_2884 0.83 +0.4 191,010 + EX28DRAFT_2884 0.86 -2.8 191,011 - EX28DRAFT_2884 0.86 -1.5 191,179 - EX28DRAFT_2885 0.55 -0.4 191,207 + EX28DRAFT_2885 0.68 -1.1 191,207 + EX28DRAFT_2885 0.68 +0.0 191,207 + EX28DRAFT_2885 0.68 +0.3 191,208 - EX28DRAFT_2885 0.68 -2.5 191,208 - EX28DRAFT_2885 0.68 -0.4 191,275 - +0.9 191,285 - +0.3 191,357 - -0.1 191,382 + +0.2 191,409 + -0.5 191,409 + +0.3 191,410 - +0.2 191,452 + -0.2 191,453 - +0.7 191,453 - -0.1 191,454 + +2.0 191,537 - +0.3 191,537 - +0.5 191,600 - EX28DRAFT_2886 0.11 +1.1 191,757 + EX28DRAFT_2886 0.24 -0.8 191,757 + EX28DRAFT_2886 0.24 -0.1
Or see this region's nucleotide sequence