Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2841

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2839 and EX28DRAFT_2840 overlap by 7 nucleotidesEX28DRAFT_2840 and EX28DRAFT_2841 overlap by 20 nucleotidesEX28DRAFT_2841 and EX28DRAFT_2842 overlap by 4 nucleotidesEX28DRAFT_2842 and EX28DRAFT_2843 overlap by 1 nucleotides EX28DRAFT_2839: EX28DRAFT_2839 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 142,060 to 142,686 _2839 EX28DRAFT_2840: EX28DRAFT_2840 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 142,680 to 143,441 _2840 EX28DRAFT_2841: EX28DRAFT_2841 - tRNA pseudouridine synthase, TruD family, at 143,422 to 144,471 _2841 EX28DRAFT_2842: EX28DRAFT_2842 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 144,468 to 144,947 _2842 EX28DRAFT_2843: EX28DRAFT_2843 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 144,947 to 145,657 _2843 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1at 142.502 kb on + strand, within EX28DRAFT_2839at 142.502 kb on + strand, within EX28DRAFT_2839at 142.502 kb on + strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.544 kb on - strand, within EX28DRAFT_2839at 142.580 kb on - strand, within EX28DRAFT_2839at 142.740 kb on - strandat 142.742 kb on - strandat 142.781 kb on - strand, within EX28DRAFT_2840at 142.830 kb on - strand, within EX28DRAFT_2840at 143.134 kb on + strand, within EX28DRAFT_2840at 143.135 kb on - strand, within EX28DRAFT_2840at 143.135 kb on - strand, within EX28DRAFT_2840at 143.316 kb on - strand, within EX28DRAFT_2840at 143.491 kb on - strandat 143.549 kb on - strand, within EX28DRAFT_2841at 143.549 kb on - strand, within EX28DRAFT_2841at 143.791 kb on + strand, within EX28DRAFT_2841at 143.997 kb on - strand, within EX28DRAFT_2841at 144.184 kb on - strand, within EX28DRAFT_2841at 144.232 kb on - strand, within EX28DRAFT_2841at 144.330 kb on + strand, within EX28DRAFT_2841at 144.342 kb on + strand, within EX28DRAFT_2841at 144.436 kb on - strandat 144.447 kb on - strandat 144.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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142,502 + EX28DRAFT_2839 0.70 -1.4
142,502 + EX28DRAFT_2839 0.70 -1.7
142,502 + EX28DRAFT_2839 0.70 -3.2
142,503 - EX28DRAFT_2839 0.71 +0.7
142,503 - EX28DRAFT_2839 0.71 +0.7
142,503 - EX28DRAFT_2839 0.71 -0.3
142,503 - EX28DRAFT_2839 0.71 -0.8
142,503 - EX28DRAFT_2839 0.71 -2.7
142,544 - EX28DRAFT_2839 0.77 +0.1
142,580 - EX28DRAFT_2839 0.83 -1.9
142,740 - +0.3
142,742 - -2.3
142,781 - EX28DRAFT_2840 0.13 +0.3
142,830 - EX28DRAFT_2840 0.20 -1.3
143,134 + EX28DRAFT_2840 0.60 -1.4
143,135 - EX28DRAFT_2840 0.60 +0.1
143,135 - EX28DRAFT_2840 0.60 +0.1
143,316 - EX28DRAFT_2840 0.83 +0.3
143,491 - -0.8
143,549 - EX28DRAFT_2841 0.12 -0.3
143,549 - EX28DRAFT_2841 0.12 -0.4
143,791 + EX28DRAFT_2841 0.35 -0.2
143,997 - EX28DRAFT_2841 0.55 -0.4
144,184 - EX28DRAFT_2841 0.73 +0.4
144,232 - EX28DRAFT_2841 0.77 -0.9
144,330 + EX28DRAFT_2841 0.86 -0.4
144,342 + EX28DRAFT_2841 0.88 +0.6
144,436 - -0.9
144,447 - +0.5
144,447 - -0.0

Or see this region's nucleotide sequence