Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2824 and EX28DRAFT_2825 overlap by 1 nucleotides EX28DRAFT_2825 and EX28DRAFT_2826 are separated by 16 nucleotides EX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotides EX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotides EX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotides
EX28DRAFT_2824: EX28DRAFT_2824 - ABC-type Fe3+-siderophore transport system, permease component, at 127,709 to 128,746
_2824
EX28DRAFT_2825: EX28DRAFT_2825 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 128,746 to 129,507
_2825
EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744
_2826
EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094
_2827
EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500
_2828
EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175
_2829
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 128.722 kb on + strand at 128.722 kb on + strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.741 kb on - strand at 128.781 kb on - strand at 128.866 kb on - strand, within EX28DRAFT_2825 at 129.135 kb on + strand, within EX28DRAFT_2825 at 129.136 kb on - strand, within EX28DRAFT_2825 at 129.189 kb on + strand, within EX28DRAFT_2825 at 129.409 kb on - strand, within EX28DRAFT_2825 at 129.414 kb on - strand, within EX28DRAFT_2825 at 129.564 kb on + strand at 129.600 kb on - strand at 129.826 kb on + strand, within EX28DRAFT_2826 at 130.056 kb on + strand, within EX28DRAFT_2826 at 130.057 kb on - strand, within EX28DRAFT_2826 at 130.082 kb on + strand, within EX28DRAFT_2826 at 130.175 kb on - strand, within EX28DRAFT_2826 at 130.185 kb on - strand, within EX28DRAFT_2826 at 130.205 kb on + strand, within EX28DRAFT_2826 at 130.311 kb on + strand, within EX28DRAFT_2826 at 130.311 kb on + strand, within EX28DRAFT_2826 at 130.312 kb on - strand, within EX28DRAFT_2826 at 130.354 kb on - strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.665 kb on - strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.845 kb on + strand, within EX28DRAFT_2827 at 130.846 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 131.036 kb on + strand, within EX28DRAFT_2827 at 131.037 kb on - strand, within EX28DRAFT_2827 at 131.223 kb on + strand at 131.269 kb on + strand at 131.298 kb on - strand, within EX28DRAFT_2828 at 131.319 kb on - strand, within EX28DRAFT_2828 at 131.392 kb on - strand, within EX28DRAFT_2828 at 131.423 kb on - strand, within EX28DRAFT_2828 at 131.478 kb on + strand at 131.546 kb on - strand at 131.546 kb on - strand at 131.607 kb on + strand at 131.607 kb on + strand at 131.608 kb on - strand at 131.663 kb on - strand at 131.729 kb on + strand at 131.729 kb on + strand at 131.730 kb on - strand at 131.730 kb on - strand at 131.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 128,722 + -1.2 128,722 + -0.3 128,723 - -0.7 128,723 - -0.1 128,741 - -0.3 128,781 - -1.4 128,866 - EX28DRAFT_2825 0.16 +0.4 129,135 + EX28DRAFT_2825 0.51 +0.2 129,136 - EX28DRAFT_2825 0.51 -0.5 129,189 + EX28DRAFT_2825 0.58 +0.4 129,409 - EX28DRAFT_2825 0.87 -0.9 129,414 - EX28DRAFT_2825 0.88 -0.2 129,564 + +0.5 129,600 - -0.1 129,826 + EX28DRAFT_2826 0.25 -0.3 130,056 + EX28DRAFT_2826 0.44 +0.5 130,057 - EX28DRAFT_2826 0.44 -0.5 130,082 + EX28DRAFT_2826 0.46 -2.3 130,175 - EX28DRAFT_2826 0.53 +0.6 130,185 - EX28DRAFT_2826 0.54 -1.1 130,205 + EX28DRAFT_2826 0.56 +0.1 130,311 + EX28DRAFT_2826 0.64 +0.0 130,311 + EX28DRAFT_2826 0.64 +0.0 130,312 - EX28DRAFT_2826 0.65 -1.6 130,354 - EX28DRAFT_2826 0.68 -0.2 130,521 + EX28DRAFT_2826 0.82 -0.1 130,521 + EX28DRAFT_2826 0.82 -0.4 130,521 + EX28DRAFT_2826 0.82 -0.9 130,665 - +0.0 130,766 + +0.1 130,766 + -0.4 130,845 + EX28DRAFT_2827 0.28 +0.2 130,846 - EX28DRAFT_2827 0.28 -0.0 130,957 - EX28DRAFT_2827 0.60 -0.7 130,957 - EX28DRAFT_2827 0.60 +0.3 131,036 + EX28DRAFT_2827 0.83 +1.6 131,037 - EX28DRAFT_2827 0.83 -0.1 131,223 + +0.9 131,269 + -1.2 131,298 - EX28DRAFT_2828 0.12 +0.3 131,319 - EX28DRAFT_2828 0.21 +0.9 131,392 - EX28DRAFT_2828 0.53 -0.2 131,423 - EX28DRAFT_2828 0.66 +0.8 131,478 + -0.1 131,546 - -1.9 131,546 - -0.2 131,607 + +0.1 131,607 + -0.0 131,608 - +0.2 131,663 - -0.7 131,729 + +0.4 131,729 + -0.9 131,730 - -0.1 131,730 - -2.0 131,730 - +0.0
Or see this region's nucleotide sequence