Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2739

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2736 and EX28DRAFT_2737 are separated by 88 nucleotidesEX28DRAFT_2737 and EX28DRAFT_2738 are separated by 57 nucleotidesEX28DRAFT_2738 and EX28DRAFT_2739 are separated by 2 nucleotidesEX28DRAFT_2739 and EX28DRAFT_2740 are separated by 85 nucleotides EX28DRAFT_2736: EX28DRAFT_2736 - hypothetical protein, at 47,963 to 48,341 _2736 EX28DRAFT_2737: EX28DRAFT_2737 - addiction module antidote protein, HigA family, at 48,430 to 48,699 _2737 EX28DRAFT_2738: EX28DRAFT_2738 - ADP-ribose pyrophosphatase, at 48,757 to 49,182 _2738 EX28DRAFT_2739: EX28DRAFT_2739 - hypothetical protein, at 49,185 to 49,694 _2739 EX28DRAFT_2740: EX28DRAFT_2740 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 49,780 to 50,961 _2740 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.289 kb on + strand, within EX28DRAFT_2736at 48.289 kb on + strand, within EX28DRAFT_2736at 48.569 kb on + strand, within EX28DRAFT_2737at 48.577 kb on - strand, within EX28DRAFT_2737at 48.702 kb on + strandat 48.702 kb on + strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.703 kb on - strandat 48.723 kb on - strandat 48.723 kb on - strandat 48.727 kb on + strandat 48.997 kb on + strand, within EX28DRAFT_2738at 49.025 kb on - strand, within EX28DRAFT_2738at 49.033 kb on + strand, within EX28DRAFT_2738at 49.034 kb on - strand, within EX28DRAFT_2738at 49.122 kb on - strand, within EX28DRAFT_2738at 49.152 kb on + strandat 49.207 kb on + strandat 49.207 kb on + strandat 49.207 kb on + strandat 49.207 kb on + strandat 49.207 kb on + strandat 49.208 kb on - strandat 49.208 kb on - strandat 49.208 kb on - strandat 49.208 kb on - strandat 49.208 kb on - strandat 49.339 kb on + strand, within EX28DRAFT_2739at 49.339 kb on + strand, within EX28DRAFT_2739at 49.340 kb on - strand, within EX28DRAFT_2739at 49.340 kb on - strand, within EX28DRAFT_2739at 49.381 kb on + strand, within EX28DRAFT_2739at 49.382 kb on - strand, within EX28DRAFT_2739at 49.534 kb on + strand, within EX28DRAFT_2739at 49.534 kb on + strand, within EX28DRAFT_2739at 49.535 kb on - strand, within EX28DRAFT_2739at 49.626 kb on - strand, within EX28DRAFT_2739at 49.634 kb on + strand, within EX28DRAFT_2739at 49.634 kb on + strand, within EX28DRAFT_2739at 49.635 kb on - strand, within EX28DRAFT_2739at 49.635 kb on - strand, within EX28DRAFT_2739at 49.635 kb on - strand, within EX28DRAFT_2739at 49.635 kb on - strand, within EX28DRAFT_2739at 49.739 kb on + strandat 49.782 kb on - strandat 49.849 kb on - strandat 49.849 kb on - strandat 49.904 kb on - strand, within EX28DRAFT_2740at 49.906 kb on + strand, within EX28DRAFT_2740at 49.948 kb on - strand, within EX28DRAFT_2740at 49.948 kb on - strand, within EX28DRAFT_2740at 49.948 kb on - strand, within EX28DRAFT_2740at 49.948 kb on - strand, within EX28DRAFT_2740at 49.951 kb on - strand, within EX28DRAFT_2740at 49.951 kb on - strand, within EX28DRAFT_2740at 50.064 kb on - strand, within EX28DRAFT_2740at 50.083 kb on - strand, within EX28DRAFT_2740at 50.115 kb on - strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.169 kb on + strand, within EX28DRAFT_2740at 50.179 kb on + strand, within EX28DRAFT_2740at 50.260 kb on - strand, within EX28DRAFT_2740at 50.260 kb on - strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.328 kb on + strand, within EX28DRAFT_2740at 50.329 kb on - strand, within EX28DRAFT_2740at 50.329 kb on - strand, within EX28DRAFT_2740at 50.330 kb on + strand, within EX28DRAFT_2740at 50.335 kb on - strand, within EX28DRAFT_2740at 50.362 kb on - strand, within EX28DRAFT_2740at 50.387 kb on - strand, within EX28DRAFT_2740at 50.457 kb on + strand, within EX28DRAFT_2740at 50.457 kb on + strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.460 kb on - strand, within EX28DRAFT_2740at 50.460 kb on - strand, within EX28DRAFT_2740at 50.585 kb on + strand, within EX28DRAFT_2740at 50.585 kb on + strand, within EX28DRAFT_2740at 50.670 kb on + strand, within EX28DRAFT_2740

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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48,289 + EX28DRAFT_2736 0.86 -0.1
48,289 + EX28DRAFT_2736 0.86 -2.4
48,569 + EX28DRAFT_2737 0.51 +0.3
48,577 - EX28DRAFT_2737 0.54 +1.2
48,702 + -0.5
48,702 + -0.2
48,703 - -0.3
48,703 - +0.5
48,703 - -0.3
48,703 - -0.1
48,703 - -1.2
48,703 - -1.4
48,703 - -0.4
48,703 - +0.5
48,703 - +0.0
48,723 - +0.4
48,723 - -0.1
48,727 + -0.7
48,997 + EX28DRAFT_2738 0.56 +1.0
49,025 - EX28DRAFT_2738 0.63 -0.6
49,033 + EX28DRAFT_2738 0.65 +1.1
49,034 - EX28DRAFT_2738 0.65 +0.5
49,122 - EX28DRAFT_2738 0.86 +0.3
49,152 + -0.7
49,207 + -0.5
49,207 + +0.4
49,207 + +0.4
49,207 + -0.1
49,207 + +0.6
49,208 - -2.3
49,208 - +0.1
49,208 - +0.4
49,208 - -0.2
49,208 - +0.4
49,339 + EX28DRAFT_2739 0.30 -0.2
49,339 + EX28DRAFT_2739 0.30 +0.1
49,340 - EX28DRAFT_2739 0.30 -0.7
49,340 - EX28DRAFT_2739 0.30 +1.9
49,381 + EX28DRAFT_2739 0.38 +0.2
49,382 - EX28DRAFT_2739 0.39 +0.4
49,534 + EX28DRAFT_2739 0.68 +0.5
49,534 + EX28DRAFT_2739 0.68 +0.5
49,535 - EX28DRAFT_2739 0.69 -0.5
49,626 - EX28DRAFT_2739 0.86 -0.3
49,634 + EX28DRAFT_2739 0.88 -0.4
49,634 + EX28DRAFT_2739 0.88 -0.0
49,635 - EX28DRAFT_2739 0.88 +0.6
49,635 - EX28DRAFT_2739 0.88 +0.9
49,635 - EX28DRAFT_2739 0.88 +0.5
49,635 - EX28DRAFT_2739 0.88 -0.9
49,739 + +0.7
49,782 - +0.3
49,849 - +0.3
49,849 - +0.2
49,904 - EX28DRAFT_2740 0.10 -0.1
49,906 + EX28DRAFT_2740 0.11 +0.1
49,948 - EX28DRAFT_2740 0.14 +0.3
49,948 - EX28DRAFT_2740 0.14 +0.4
49,948 - EX28DRAFT_2740 0.14 +2.7
49,948 - EX28DRAFT_2740 0.14 -0.6
49,951 - EX28DRAFT_2740 0.14 -0.3
49,951 - EX28DRAFT_2740 0.14 -0.3
50,064 - EX28DRAFT_2740 0.24 +0.3
50,083 - EX28DRAFT_2740 0.26 +0.4
50,115 - EX28DRAFT_2740 0.28 -0.6
50,120 + EX28DRAFT_2740 0.29 -0.2
50,120 + EX28DRAFT_2740 0.29 -1.5
50,120 + EX28DRAFT_2740 0.29 +0.1
50,121 - EX28DRAFT_2740 0.29 -0.0
50,121 - EX28DRAFT_2740 0.29 +0.3
50,121 - EX28DRAFT_2740 0.29 +0.4
50,121 - EX28DRAFT_2740 0.29 -0.5
50,121 - EX28DRAFT_2740 0.29 -1.1
50,121 - EX28DRAFT_2740 0.29 +1.0
50,169 + EX28DRAFT_2740 0.33 +0.3
50,179 + EX28DRAFT_2740 0.34 -0.5
50,260 - EX28DRAFT_2740 0.41 -0.6
50,260 - EX28DRAFT_2740 0.41 +0.2
50,261 + EX28DRAFT_2740 0.41 -0.1
50,261 + EX28DRAFT_2740 0.41 -0.1
50,261 + EX28DRAFT_2740 0.41 -0.0
50,328 + EX28DRAFT_2740 0.46 -0.3
50,329 - EX28DRAFT_2740 0.46 +0.4
50,329 - EX28DRAFT_2740 0.46 -0.9
50,330 + EX28DRAFT_2740 0.47 +0.0
50,335 - EX28DRAFT_2740 0.47 +0.3
50,362 - EX28DRAFT_2740 0.49 -0.1
50,387 - EX28DRAFT_2740 0.51 -0.7
50,457 + EX28DRAFT_2740 0.57 -0.3
50,457 + EX28DRAFT_2740 0.57 +0.6
50,458 - EX28DRAFT_2740 0.57 +1.0
50,458 - EX28DRAFT_2740 0.57 +0.6
50,458 - EX28DRAFT_2740 0.57 -0.3
50,459 + EX28DRAFT_2740 0.57 -0.5
50,459 + EX28DRAFT_2740 0.57 -1.2
50,459 + EX28DRAFT_2740 0.57 +0.4
50,459 + EX28DRAFT_2740 0.57 +0.3
50,459 + EX28DRAFT_2740 0.57 -1.9
50,460 - EX28DRAFT_2740 0.58 -0.1
50,460 - EX28DRAFT_2740 0.58 -0.0
50,585 + EX28DRAFT_2740 0.68 +0.6
50,585 + EX28DRAFT_2740 0.68 +0.5
50,670 + EX28DRAFT_2740 0.75 +0.8

Or see this region's nucleotide sequence