Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2703 and EX28DRAFT_2704 are separated by 92 nucleotides EX28DRAFT_2704 and EX28DRAFT_2705 overlap by 8 nucleotides EX28DRAFT_2705 and EX28DRAFT_2706 are separated by 12 nucleotides EX28DRAFT_2706 and EX28DRAFT_2707 are separated by 2 nucleotides
EX28DRAFT_2703: EX28DRAFT_2703 - Protein of unknown function (DUF2799), at 11,168 to 11,542
_2703
EX28DRAFT_2704: EX28DRAFT_2704 - Domain of unknown function (DUF4154), at 11,635 to 12,231
_2704
EX28DRAFT_2705: EX28DRAFT_2705 - diguanylate cyclase (GGDEF) domain, at 12,224 to 13,444
_2705
EX28DRAFT_2706: EX28DRAFT_2706 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 13,457 to 13,942
_2706
EX28DRAFT_2707: EX28DRAFT_2707 - Uncharacterized iron-regulated membrane protein, at 13,945 to 15,315
_2707
Position (kb)
12
13
14 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 11.311 kb on + strand, within EX28DRAFT_2703 at 11.364 kb on - strand, within EX28DRAFT_2703 at 11.413 kb on + strand, within EX28DRAFT_2703 at 11.518 kb on + strand at 11.518 kb on + strand at 11.540 kb on + strand at 11.545 kb on + strand at 11.576 kb on - strand at 11.588 kb on - strand at 11.604 kb on - strand at 11.614 kb on + strand at 11.615 kb on - strand at 11.657 kb on + strand at 11.657 kb on + strand at 11.667 kb on + strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.784 kb on + strand, within EX28DRAFT_2704 at 11.866 kb on - strand, within EX28DRAFT_2704 at 11.896 kb on - strand, within EX28DRAFT_2704 at 11.934 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.941 kb on - strand, within EX28DRAFT_2704 at 11.998 kb on + strand, within EX28DRAFT_2704 at 12.066 kb on - strand, within EX28DRAFT_2704 at 12.068 kb on + strand, within EX28DRAFT_2704 at 12.138 kb on - strand, within EX28DRAFT_2704 at 12.138 kb on - strand, within EX28DRAFT_2704 at 12.180 kb on - strand at 12.198 kb on - strand at 12.198 kb on - strand at 12.216 kb on + strand at 12.217 kb on - strand at 12.230 kb on - strand at 12.291 kb on + strand at 12.291 kb on + strand at 12.315 kb on + strand at 12.316 kb on - strand at 12.319 kb on - strand at 12.503 kb on - strand, within EX28DRAFT_2705 at 12.718 kb on + strand, within EX28DRAFT_2705 at 12.748 kb on + strand, within EX28DRAFT_2705 at 12.748 kb on + strand, within EX28DRAFT_2705 at 12.749 kb on - strand, within EX28DRAFT_2705 at 12.749 kb on - strand, within EX28DRAFT_2705 at 12.749 kb on - strand, within EX28DRAFT_2705 at 12.749 kb on - strand, within EX28DRAFT_2705 at 12.751 kb on + strand, within EX28DRAFT_2705 at 13.085 kb on - strand, within EX28DRAFT_2705 at 13.085 kb on - strand, within EX28DRAFT_2705 at 13.096 kb on + strand, within EX28DRAFT_2705 at 13.097 kb on - strand, within EX28DRAFT_2705 at 13.097 kb on - strand, within EX28DRAFT_2705 at 13.227 kb on - strand, within EX28DRAFT_2705 at 13.307 kb on - strand, within EX28DRAFT_2705 at 13.381 kb on - strand at 13.451 kb on + strand at 13.456 kb on + strand at 13.456 kb on + strand at 13.456 kb on + strand at 13.461 kb on + strand at 13.537 kb on + strand, within EX28DRAFT_2706 at 13.630 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.743 kb on - strand, within EX28DRAFT_2706 at 13.757 kb on + strand, within EX28DRAFT_2706 at 13.822 kb on + strand, within EX28DRAFT_2706 at 13.855 kb on - strand, within EX28DRAFT_2706 at 13.940 kb on + strand at 13.946 kb on + strand at 13.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 11,311 + EX28DRAFT_2703 0.38 +1.5 11,364 - EX28DRAFT_2703 0.52 +1.8 11,413 + EX28DRAFT_2703 0.65 +0.8 11,518 + -0.8 11,518 + -2.9 11,540 + -1.2 11,545 + +0.8 11,576 - -0.2 11,588 - -0.3 11,604 - -1.3 11,614 + +0.2 11,615 - -0.2 11,657 + +1.1 11,657 + -0.6 11,667 + -0.1 11,668 - -0.5 11,668 - -0.7 11,668 - -0.9 11,668 - +0.7 11,754 + EX28DRAFT_2704 0.20 -2.7 11,754 + EX28DRAFT_2704 0.20 +2.1 11,755 - EX28DRAFT_2704 0.20 -0.1 11,755 - EX28DRAFT_2704 0.20 +2.1 11,784 + EX28DRAFT_2704 0.25 -0.5 11,866 - EX28DRAFT_2704 0.39 -0.2 11,896 - EX28DRAFT_2704 0.44 +2.1 11,934 - EX28DRAFT_2704 0.50 -0.5 11,939 - EX28DRAFT_2704 0.51 +0.2 11,939 - EX28DRAFT_2704 0.51 -3.2 11,941 - EX28DRAFT_2704 0.51 -1.1 11,998 + EX28DRAFT_2704 0.61 -1.5 12,066 - EX28DRAFT_2704 0.72 -0.9 12,068 + EX28DRAFT_2704 0.73 -0.6 12,138 - EX28DRAFT_2704 0.84 -0.6 12,138 - EX28DRAFT_2704 0.84 +0.9 12,180 - +0.9 12,198 - -0.0 12,198 - -0.5 12,216 + +0.4 12,217 - +0.1 12,230 - -1.1 12,291 + -1.4 12,291 + -2.5 12,315 + -0.4 12,316 - -0.2 12,319 - +0.9 12,503 - EX28DRAFT_2705 0.23 +0.1 12,718 + EX28DRAFT_2705 0.40 -2.3 12,748 + EX28DRAFT_2705 0.43 +0.0 12,748 + EX28DRAFT_2705 0.43 +1.0 12,749 - EX28DRAFT_2705 0.43 +0.5 12,749 - EX28DRAFT_2705 0.43 -0.1 12,749 - EX28DRAFT_2705 0.43 -0.1 12,749 - EX28DRAFT_2705 0.43 +0.1 12,751 + EX28DRAFT_2705 0.43 +0.1 13,085 - EX28DRAFT_2705 0.71 +0.0 13,085 - EX28DRAFT_2705 0.71 -0.2 13,096 + EX28DRAFT_2705 0.71 +0.8 13,097 - EX28DRAFT_2705 0.71 -0.6 13,097 - EX28DRAFT_2705 0.71 +1.1 13,227 - EX28DRAFT_2705 0.82 +0.1 13,307 - EX28DRAFT_2705 0.89 -0.2 13,381 - +0.8 13,451 + -0.2 13,456 + +0.8 13,456 + +0.4 13,456 + -0.4 13,461 + +0.7 13,537 + EX28DRAFT_2706 0.16 +0.8 13,630 + EX28DRAFT_2706 0.36 +1.2 13,742 + EX28DRAFT_2706 0.59 -1.1 13,742 + EX28DRAFT_2706 0.59 +0.1 13,742 + EX28DRAFT_2706 0.59 -1.5 13,743 - EX28DRAFT_2706 0.59 -0.2 13,757 + EX28DRAFT_2706 0.62 -2.6 13,822 + EX28DRAFT_2706 0.75 +0.1 13,855 - EX28DRAFT_2706 0.82 -0.4 13,940 + -0.2 13,946 + -0.9 13,946 + -1.0
Or see this region's nucleotide sequence