Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2675 and EX28DRAFT_2676 overlap by 4 nucleotides EX28DRAFT_2676 and EX28DRAFT_2677 are separated by 82 nucleotides EX28DRAFT_2677 and EX28DRAFT_2678 are separated by 24 nucleotides EX28DRAFT_2678 and EX28DRAFT_2679 are separated by 132 nucleotides
EX28DRAFT_2675: EX28DRAFT_2675 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,714,263 to 2,715,276
_2675
EX28DRAFT_2676: EX28DRAFT_2676 - Transcriptional regulators, at 2,715,273 to 2,715,992
_2676
EX28DRAFT_2677: EX28DRAFT_2677 - hypothetical protein, at 2,716,075 to 2,716,347
_2677
EX28DRAFT_2678: EX28DRAFT_2678 - tRNA, at 2,716,372 to 2,716,448
_2678
EX28DRAFT_2679: EX28DRAFT_2679 - DNA polymerase III, epsilon subunit, Proteobacterial, at 2,716,581 to 2,717,321
_2679
Position (kb)
2716
2717 Strain fitness (log2 ratio)
-1
0
1 at 2715.181 kb on - strand at 2715.259 kb on - strand at 2715.265 kb on + strand at 2715.398 kb on + strand, within EX28DRAFT_2676 at 2715.398 kb on + strand, within EX28DRAFT_2676 at 2715.398 kb on + strand, within EX28DRAFT_2676 at 2715.399 kb on - strand, within EX28DRAFT_2676 at 2715.399 kb on - strand, within EX28DRAFT_2676 at 2715.445 kb on - strand, within EX28DRAFT_2676 at 2715.775 kb on - strand, within EX28DRAFT_2676 at 2715.776 kb on + strand, within EX28DRAFT_2676 at 2715.930 kb on - strand at 2716.262 kb on - strand, within EX28DRAFT_2677 at 2716.370 kb on - strand at 2716.557 kb on + strand at 2716.561 kb on - strand at 2716.561 kb on - strand at 2716.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,715,181 - -0.1 2,715,259 - +0.3 2,715,265 + +0.1 2,715,398 + EX28DRAFT_2676 0.17 +0.4 2,715,398 + EX28DRAFT_2676 0.17 +0.7 2,715,398 + EX28DRAFT_2676 0.17 +0.2 2,715,399 - EX28DRAFT_2676 0.17 +0.3 2,715,399 - EX28DRAFT_2676 0.17 -0.0 2,715,445 - EX28DRAFT_2676 0.24 -0.3 2,715,775 - EX28DRAFT_2676 0.70 -1.4 2,715,776 + EX28DRAFT_2676 0.70 -1.7 2,715,930 - +0.3 2,716,262 - EX28DRAFT_2677 0.68 -1.1 2,716,370 - -0.2 2,716,557 + +1.4 2,716,561 - +0.5 2,716,561 - -0.1 2,716,561 - -0.3
Or see this region's nucleotide sequence