Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2621 and EX28DRAFT_2622 are separated by 576 nucleotides EX28DRAFT_2622 and EX28DRAFT_2623 are separated by 259 nucleotides
EX28DRAFT_2621: EX28DRAFT_2621 - hypothetical protein, at 2,660,141 to 2,660,500
_2621
EX28DRAFT_2622: EX28DRAFT_2622 - hypothetical protein, at 2,661,077 to 2,661,432
_2622
EX28DRAFT_2623: EX28DRAFT_2623 - Enolase, at 2,661,692 to 2,662,963
_2623
Position (kb)
2661
2662 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2660.079 kb on - strand at 2660.129 kb on + strand at 2660.138 kb on + strand at 2660.139 kb on - strand at 2660.139 kb on - strand at 2660.223 kb on + strand, within EX28DRAFT_2621 at 2660.223 kb on + strand, within EX28DRAFT_2621 at 2660.353 kb on - strand, within EX28DRAFT_2621 at 2660.449 kb on - strand, within EX28DRAFT_2621 at 2660.515 kb on + strand at 2660.516 kb on - strand at 2660.592 kb on + strand at 2660.690 kb on + strand at 2660.691 kb on - strand at 2660.725 kb on + strand at 2660.725 kb on + strand at 2660.725 kb on + strand at 2660.726 kb on - strand at 2660.791 kb on + strand at 2660.872 kb on + strand at 2660.872 kb on + strand at 2660.928 kb on + strand at 2660.935 kb on + strand at 2660.935 kb on + strand at 2660.935 kb on + strand at 2660.988 kb on + strand at 2660.988 kb on + strand at 2660.999 kb on + strand at 2660.999 kb on + strand at 2661.000 kb on - strand at 2661.051 kb on - strand at 2661.051 kb on - strand at 2661.172 kb on + strand, within EX28DRAFT_2622 at 2661.231 kb on + strand, within EX28DRAFT_2622 at 2661.251 kb on + strand, within EX28DRAFT_2622 at 2661.251 kb on + strand, within EX28DRAFT_2622 at 2661.290 kb on + strand, within EX28DRAFT_2622 at 2661.294 kb on - strand, within EX28DRAFT_2622 at 2661.328 kb on + strand, within EX28DRAFT_2622 at 2661.328 kb on + strand, within EX28DRAFT_2622 at 2661.329 kb on - strand, within EX28DRAFT_2622 at 2661.455 kb on + strand at 2661.498 kb on + strand at 2661.498 kb on + strand at 2661.568 kb on + strand at 2661.569 kb on - strand at 2661.590 kb on + strand at 2661.591 kb on - strand at 2661.591 kb on - strand at 2661.591 kb on - strand at 2661.593 kb on + strand at 2661.594 kb on - strand at 2661.594 kb on - strand at 2661.631 kb on + strand at 2661.631 kb on + strand at 2661.631 kb on + strand at 2661.631 kb on + strand at 2661.632 kb on - strand at 2661.632 kb on - strand at 2661.632 kb on - strand at 2661.635 kb on + strand at 2661.635 kb on + strand at 2661.635 kb on + strand at 2661.635 kb on + strand at 2661.636 kb on - strand at 2661.636 kb on - strand at 2661.684 kb on + strand at 2661.685 kb on - strand at 2661.719 kb on + strand at 2661.719 kb on + strand at 2661.720 kb on - strand at 2661.978 kb on - strand, within EX28DRAFT_2623 at 2661.978 kb on - strand, within EX28DRAFT_2623 at 2662.072 kb on + strand, within EX28DRAFT_2623 at 2662.072 kb on + strand, within EX28DRAFT_2623 at 2662.072 kb on + strand, within EX28DRAFT_2623 at 2662.161 kb on + strand, within EX28DRAFT_2623 at 2662.161 kb on + strand, within EX28DRAFT_2623 at 2662.162 kb on - strand, within EX28DRAFT_2623 at 2662.162 kb on - strand, within EX28DRAFT_2623 at 2662.162 kb on - strand, within EX28DRAFT_2623 at 2662.259 kb on - strand, within EX28DRAFT_2623 at 2662.259 kb on - strand, within EX28DRAFT_2623 at 2662.264 kb on + strand, within EX28DRAFT_2623 at 2662.301 kb on + strand, within EX28DRAFT_2623
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,660,079 - +0.4 2,660,129 + +0.5 2,660,138 + +0.2 2,660,139 - +0.6 2,660,139 - -2.7 2,660,223 + EX28DRAFT_2621 0.23 -0.5 2,660,223 + EX28DRAFT_2621 0.23 -0.6 2,660,353 - EX28DRAFT_2621 0.59 -0.5 2,660,449 - EX28DRAFT_2621 0.86 +0.4 2,660,515 + +0.1 2,660,516 - -0.5 2,660,592 + +0.6 2,660,690 + +0.2 2,660,691 - -0.2 2,660,725 + -0.7 2,660,725 + -0.1 2,660,725 + -0.6 2,660,726 - +0.1 2,660,791 + -0.2 2,660,872 + +0.8 2,660,872 + -0.0 2,660,928 + +0.1 2,660,935 + -1.1 2,660,935 + +0.4 2,660,935 + -0.1 2,660,988 + -0.4 2,660,988 + +0.1 2,660,999 + -0.1 2,660,999 + +0.6 2,661,000 - -0.7 2,661,051 - -0.4 2,661,051 - -0.9 2,661,172 + EX28DRAFT_2622 0.27 -0.4 2,661,231 + EX28DRAFT_2622 0.43 -0.2 2,661,251 + EX28DRAFT_2622 0.49 -0.3 2,661,251 + EX28DRAFT_2622 0.49 +0.7 2,661,290 + EX28DRAFT_2622 0.60 +0.3 2,661,294 - EX28DRAFT_2622 0.61 -1.1 2,661,328 + EX28DRAFT_2622 0.71 +0.5 2,661,328 + EX28DRAFT_2622 0.71 +0.1 2,661,329 - EX28DRAFT_2622 0.71 -2.9 2,661,455 + +0.6 2,661,498 + -0.6 2,661,498 + +0.8 2,661,568 + -1.2 2,661,569 - +0.6 2,661,590 + +0.0 2,661,591 - -0.9 2,661,591 - -0.6 2,661,591 - -2.4 2,661,593 + +0.0 2,661,594 - +0.1 2,661,594 - +0.1 2,661,631 + +0.1 2,661,631 + +0.4 2,661,631 + -2.1 2,661,631 + -1.2 2,661,632 - +0.0 2,661,632 - -0.4 2,661,632 - -0.0 2,661,635 + -0.5 2,661,635 + -0.1 2,661,635 + -0.1 2,661,635 + +0.2 2,661,636 - +0.5 2,661,636 - +0.5 2,661,684 + +1.5 2,661,685 - +0.5 2,661,719 + +1.1 2,661,719 + -2.8 2,661,720 - -1.1 2,661,978 - EX28DRAFT_2623 0.22 -0.4 2,661,978 - EX28DRAFT_2623 0.22 +0.4 2,662,072 + EX28DRAFT_2623 0.30 +1.1 2,662,072 + EX28DRAFT_2623 0.30 +0.3 2,662,072 + EX28DRAFT_2623 0.30 -0.1 2,662,161 + EX28DRAFT_2623 0.37 -0.3 2,662,161 + EX28DRAFT_2623 0.37 +0.2 2,662,162 - EX28DRAFT_2623 0.37 +1.3 2,662,162 - EX28DRAFT_2623 0.37 -0.1 2,662,162 - EX28DRAFT_2623 0.37 +0.3 2,662,259 - EX28DRAFT_2623 0.45 +0.0 2,662,259 - EX28DRAFT_2623 0.45 +0.7 2,662,264 + EX28DRAFT_2623 0.45 +1.0 2,662,301 + EX28DRAFT_2623 0.48 -1.0
Or see this region's nucleotide sequence