Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2519

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2518 and EX28DRAFT_2519 are separated by 35 nucleotidesEX28DRAFT_2519 and EX28DRAFT_2520 are separated by 221 nucleotides EX28DRAFT_2518: EX28DRAFT_2518 - ammonium transporter, at 2,547,819 to 2,549,108 _2518 EX28DRAFT_2519: EX28DRAFT_2519 - nitrogen regulatory protein P-II family, at 2,549,144 to 2,549,482 _2519 EX28DRAFT_2520: EX28DRAFT_2520 - ABC-type multidrug transport system, ATPase and permease components, at 2,549,704 to 2,551,485 _2520 Position (kb) 2549 2550Strain fitness (log2 ratio) -3 -2 -1 0 1at 2548.415 kb on - strand, within EX28DRAFT_2518at 2548.539 kb on + strand, within EX28DRAFT_2518at 2548.539 kb on + strand, within EX28DRAFT_2518at 2548.621 kb on + strand, within EX28DRAFT_2518at 2548.621 kb on + strand, within EX28DRAFT_2518at 2548.674 kb on - strand, within EX28DRAFT_2518at 2548.712 kb on + strand, within EX28DRAFT_2518at 2548.747 kb on + strand, within EX28DRAFT_2518at 2548.753 kb on + strand, within EX28DRAFT_2518at 2549.101 kb on - strandat 2549.101 kb on - strandat 2549.323 kb on + strand, within EX28DRAFT_2519at 2549.324 kb on - strand, within EX28DRAFT_2519at 2549.462 kb on + strandat 2549.462 kb on + strandat 2549.463 kb on - strandat 2549.482 kb on + strandat 2549.483 kb on - strandat 2549.483 kb on - strandat 2549.533 kb on - strandat 2549.771 kb on + strandat 2550.084 kb on + strand, within EX28DRAFT_2520at 2550.085 kb on - strand, within EX28DRAFT_2520at 2550.349 kb on - strand, within EX28DRAFT_2520

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,548,415 - EX28DRAFT_2518 0.46 -1.1
2,548,539 + EX28DRAFT_2518 0.56 +0.9
2,548,539 + EX28DRAFT_2518 0.56 -1.9
2,548,621 + EX28DRAFT_2518 0.62 -0.0
2,548,621 + EX28DRAFT_2518 0.62 -0.6
2,548,674 - EX28DRAFT_2518 0.66 -0.5
2,548,712 + EX28DRAFT_2518 0.69 +0.9
2,548,747 + EX28DRAFT_2518 0.72 -0.8
2,548,753 + EX28DRAFT_2518 0.72 -0.4
2,549,101 - -0.3
2,549,101 - +0.2
2,549,323 + EX28DRAFT_2519 0.53 -0.2
2,549,324 - EX28DRAFT_2519 0.53 +1.5
2,549,462 + -0.6
2,549,462 + -0.7
2,549,463 - +0.7
2,549,482 + -0.2
2,549,483 - -0.3
2,549,483 - -0.6
2,549,533 - -3.0
2,549,771 + +0.0
2,550,084 + EX28DRAFT_2520 0.21 +0.4
2,550,085 - EX28DRAFT_2520 0.21 -1.7
2,550,349 - EX28DRAFT_2520 0.36 -2.4

Or see this region's nucleotide sequence