Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2438 and EX28DRAFT_2439 are separated by 100 nucleotides EX28DRAFT_2439 and EX28DRAFT_2440 are separated by 278 nucleotides EX28DRAFT_2440 and EX28DRAFT_2441 are separated by 24 nucleotides
EX28DRAFT_2438: EX28DRAFT_2438 - CAAX protease self-immunity, at 2,469,431 to 2,470,261
_2438
EX28DRAFT_2439: EX28DRAFT_2439 - tRNA, at 2,470,362 to 2,470,438
_2439
EX28DRAFT_2440: EX28DRAFT_2440 - FOG: EAL domain, at 2,470,717 to 2,471,415
_2440
EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168
_2441
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2469.779 kb on - strand, within EX28DRAFT_2438 at 2469.898 kb on + strand, within EX28DRAFT_2438 at 2469.934 kb on + strand, within EX28DRAFT_2438 at 2469.934 kb on + strand, within EX28DRAFT_2438 at 2469.939 kb on + strand, within EX28DRAFT_2438 at 2469.939 kb on + strand, within EX28DRAFT_2438 at 2469.940 kb on - strand, within EX28DRAFT_2438 at 2469.940 kb on - strand, within EX28DRAFT_2438 at 2469.944 kb on - strand, within EX28DRAFT_2438 at 2470.066 kb on - strand, within EX28DRAFT_2438 at 2470.066 kb on - strand, within EX28DRAFT_2438 at 2470.066 kb on - strand, within EX28DRAFT_2438 at 2470.066 kb on - strand, within EX28DRAFT_2438 at 2470.066 kb on - strand, within EX28DRAFT_2438 at 2470.069 kb on + strand, within EX28DRAFT_2438 at 2470.069 kb on + strand, within EX28DRAFT_2438 at 2470.069 kb on + strand, within EX28DRAFT_2438 at 2470.070 kb on - strand, within EX28DRAFT_2438 at 2470.070 kb on - strand, within EX28DRAFT_2438 at 2470.070 kb on - strand, within EX28DRAFT_2438 at 2470.070 kb on - strand, within EX28DRAFT_2438 at 2470.070 kb on - strand, within EX28DRAFT_2438 at 2470.072 kb on - strand, within EX28DRAFT_2438 at 2470.072 kb on - strand, within EX28DRAFT_2438 at 2470.075 kb on + strand, within EX28DRAFT_2438 at 2470.087 kb on + strand, within EX28DRAFT_2438 at 2470.199 kb on + strand at 2470.199 kb on + strand at 2470.200 kb on - strand at 2470.204 kb on - strand at 2470.216 kb on + strand at 2470.251 kb on - strand at 2470.254 kb on + strand at 2470.254 kb on + strand at 2470.254 kb on + strand at 2470.255 kb on - strand at 2470.261 kb on + strand at 2470.261 kb on + strand at 2470.261 kb on + strand at 2470.261 kb on + strand at 2470.261 kb on + strand at 2470.261 kb on + strand at 2470.262 kb on - strand at 2470.307 kb on - strand at 2470.307 kb on - strand at 2470.307 kb on - strand at 2470.345 kb on + strand at 2470.613 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.624 kb on - strand at 2470.624 kb on - strand at 2470.624 kb on - strand at 2470.666 kb on - strand at 2470.759 kb on + strand at 2470.759 kb on + strand at 2470.760 kb on - strand at 2470.785 kb on + strand at 2470.785 kb on + strand at 2470.786 kb on - strand at 2470.786 kb on - strand at 2470.838 kb on + strand, within EX28DRAFT_2440 at 2470.839 kb on - strand, within EX28DRAFT_2440 at 2471.226 kb on + strand, within EX28DRAFT_2440 at 2471.226 kb on + strand, within EX28DRAFT_2440 at 2471.227 kb on - strand, within EX28DRAFT_2440 at 2471.227 kb on - strand, within EX28DRAFT_2440 at 2471.319 kb on + strand, within EX28DRAFT_2440 at 2471.319 kb on + strand, within EX28DRAFT_2440 at 2471.320 kb on - strand, within EX28DRAFT_2440 at 2471.320 kb on - strand, within EX28DRAFT_2440 at 2471.381 kb on - strand at 2471.383 kb on + strand at 2471.383 kb on + strand at 2471.384 kb on - strand at 2471.500 kb on - strand at 2471.614 kb on + strand, within EX28DRAFT_2441 at 2471.734 kb on - strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.839 kb on + strand, within EX28DRAFT_2441 at 2471.936 kb on + strand, within EX28DRAFT_2441 at 2472.033 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.061 kb on - strand, within EX28DRAFT_2441 at 2472.064 kb on + strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.098 kb on + strand at 2472.175 kb on - strand at 2472.175 kb on - strand at 2472.252 kb on - strand at 2472.254 kb on - strand at 2472.257 kb on + strand at 2472.331 kb on + strand at 2472.363 kb on - strand at 2472.386 kb on - strand at 2472.404 kb on + strand at 2472.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,469,779 - EX28DRAFT_2438 0.42 -0.7 2,469,898 + EX28DRAFT_2438 0.56 -0.8 2,469,934 + EX28DRAFT_2438 0.61 -0.2 2,469,934 + EX28DRAFT_2438 0.61 -0.2 2,469,939 + EX28DRAFT_2438 0.61 -0.2 2,469,939 + EX28DRAFT_2438 0.61 +1.6 2,469,940 - EX28DRAFT_2438 0.61 -1.4 2,469,940 - EX28DRAFT_2438 0.61 +0.3 2,469,944 - EX28DRAFT_2438 0.62 -0.1 2,470,066 - EX28DRAFT_2438 0.76 +0.9 2,470,066 - EX28DRAFT_2438 0.76 +0.7 2,470,066 - EX28DRAFT_2438 0.76 +0.5 2,470,066 - EX28DRAFT_2438 0.76 -0.3 2,470,066 - EX28DRAFT_2438 0.76 -0.5 2,470,069 + EX28DRAFT_2438 0.77 +0.4 2,470,069 + EX28DRAFT_2438 0.77 -0.4 2,470,069 + EX28DRAFT_2438 0.77 +0.3 2,470,070 - EX28DRAFT_2438 0.77 -0.2 2,470,070 - EX28DRAFT_2438 0.77 +0.2 2,470,070 - EX28DRAFT_2438 0.77 -1.5 2,470,070 - EX28DRAFT_2438 0.77 +0.2 2,470,070 - EX28DRAFT_2438 0.77 -2.1 2,470,072 - EX28DRAFT_2438 0.77 -0.2 2,470,072 - EX28DRAFT_2438 0.77 -1.2 2,470,075 + EX28DRAFT_2438 0.77 +4.6 2,470,087 + EX28DRAFT_2438 0.79 +0.6 2,470,199 + -0.3 2,470,199 + +0.2 2,470,200 - +0.3 2,470,204 - -1.0 2,470,216 + -0.4 2,470,251 - -1.1 2,470,254 + -1.1 2,470,254 + +0.3 2,470,254 + -0.7 2,470,255 - +0.9 2,470,261 + -1.0 2,470,261 + -1.2 2,470,261 + -0.5 2,470,261 + -0.3 2,470,261 + -1.0 2,470,261 + +1.3 2,470,262 - -0.3 2,470,307 - -0.6 2,470,307 - +0.1 2,470,307 - +1.8 2,470,345 + +0.1 2,470,613 + +0.6 2,470,623 + +0.4 2,470,623 + -0.2 2,470,623 + -0.4 2,470,623 + -1.2 2,470,624 - +0.0 2,470,624 - +0.3 2,470,624 - +1.0 2,470,666 - -0.3 2,470,759 + -1.1 2,470,759 + -0.8 2,470,760 - +0.0 2,470,785 + -0.4 2,470,785 + -2.7 2,470,786 - +0.3 2,470,786 - +1.1 2,470,838 + EX28DRAFT_2440 0.17 -0.5 2,470,839 - EX28DRAFT_2440 0.17 -0.1 2,471,226 + EX28DRAFT_2440 0.73 -2.2 2,471,226 + EX28DRAFT_2440 0.73 -1.7 2,471,227 - EX28DRAFT_2440 0.73 -0.2 2,471,227 - EX28DRAFT_2440 0.73 +0.3 2,471,319 + EX28DRAFT_2440 0.86 -1.3 2,471,319 + EX28DRAFT_2440 0.86 -4.3 2,471,320 - EX28DRAFT_2440 0.86 -1.0 2,471,320 - EX28DRAFT_2440 0.86 -0.3 2,471,381 - +0.4 2,471,383 + -3.5 2,471,383 + -2.0 2,471,384 - -0.1 2,471,500 - -0.0 2,471,614 + EX28DRAFT_2441 0.24 +0.7 2,471,734 - EX28DRAFT_2441 0.40 -2.2 2,471,787 + EX28DRAFT_2441 0.48 +0.7 2,471,787 + EX28DRAFT_2441 0.48 +1.4 2,471,787 + EX28DRAFT_2441 0.48 +1.0 2,471,788 - EX28DRAFT_2441 0.48 -1.6 2,471,788 - EX28DRAFT_2441 0.48 +0.6 2,471,788 - EX28DRAFT_2441 0.48 +0.6 2,471,839 + EX28DRAFT_2441 0.55 +0.7 2,471,936 + EX28DRAFT_2441 0.68 +1.1 2,472,033 + EX28DRAFT_2441 0.81 +0.5 2,472,060 + EX28DRAFT_2441 0.85 +0.2 2,472,060 + EX28DRAFT_2441 0.85 -0.6 2,472,060 + EX28DRAFT_2441 0.85 +0.6 2,472,061 - EX28DRAFT_2441 0.85 +0.3 2,472,064 + EX28DRAFT_2441 0.86 +0.2 2,472,065 - EX28DRAFT_2441 0.86 +0.6 2,472,065 - EX28DRAFT_2441 0.86 +0.1 2,472,098 + +0.3 2,472,175 - +1.8 2,472,175 - -0.0 2,472,252 - +0.3 2,472,254 - -0.3 2,472,257 + +0.5 2,472,331 + +0.7 2,472,363 - +1.6 2,472,386 - +0.8 2,472,404 + +0.6 2,472,405 - +3.7
Or see this region's nucleotide sequence