Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotides EX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides
EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329
_2385
EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045
_2386
EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531
_2387
Position (kb)
2411
2412
2413 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2410.834 kb on - strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.968 kb on + strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2411.136 kb on + strand at 2411.137 kb on - strand at 2411.157 kb on + strand at 2411.158 kb on - strand at 2411.161 kb on - strand at 2411.272 kb on + strand at 2411.395 kb on - strand at 2411.421 kb on + strand at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.602 kb on + strand, within EX28DRAFT_2386 at 2411.603 kb on - strand, within EX28DRAFT_2386 at 2412.006 kb on + strand at 2412.032 kb on + strand at 2412.059 kb on - strand at 2412.086 kb on + strand at 2412.086 kb on + strand at 2412.087 kb on - strand at 2412.087 kb on - strand at 2412.088 kb on + strand at 2412.088 kb on + strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.103 kb on + strand at 2412.103 kb on + strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.402 kb on - strand, within EX28DRAFT_2387 at 2412.632 kb on + strand, within EX28DRAFT_2387 at 2412.660 kb on + strand, within EX28DRAFT_2387
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,410,834 - EX28DRAFT_2385 0.76 -0.7 2,410,837 + EX28DRAFT_2385 0.76 -1.3 2,410,837 + EX28DRAFT_2385 0.76 -1.9 2,410,837 + EX28DRAFT_2385 0.76 -0.8 2,410,838 - EX28DRAFT_2385 0.76 +2.1 2,410,838 - EX28DRAFT_2385 0.76 -0.2 2,410,968 + EX28DRAFT_2385 0.82 -0.6 2,410,969 - EX28DRAFT_2385 0.82 -1.2 2,410,969 - EX28DRAFT_2385 0.82 -1.8 2,411,136 + -1.2 2,411,137 - +0.7 2,411,157 + -0.2 2,411,158 - +0.7 2,411,161 - -0.1 2,411,272 + +1.0 2,411,395 - +0.0 2,411,421 + -0.4 2,411,522 + EX28DRAFT_2386 0.11 -0.1 2,411,522 + EX28DRAFT_2386 0.11 -1.2 2,411,522 + EX28DRAFT_2386 0.11 -0.3 2,411,602 + EX28DRAFT_2386 0.24 -2.3 2,411,603 - EX28DRAFT_2386 0.25 +0.1 2,412,006 + -0.6 2,412,032 + -0.1 2,412,059 - +0.5 2,412,086 + -0.1 2,412,086 + -0.1 2,412,087 - -0.2 2,412,087 - -0.8 2,412,088 + -0.5 2,412,088 + +0.0 2,412,089 - -0.1 2,412,089 - -1.3 2,412,089 - +0.9 2,412,089 - -0.1 2,412,103 + -0.4 2,412,103 + +0.0 2,412,104 - -0.3 2,412,104 - -0.5 2,412,104 - +0.6 2,412,104 - -0.5 2,412,104 - -0.1 2,412,402 - EX28DRAFT_2387 0.23 -0.3 2,412,632 + EX28DRAFT_2387 0.39 -0.6 2,412,660 + EX28DRAFT_2387 0.41 -1.5
Or see this region's nucleotide sequence